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- PDB-7dw4: Crystal structure of a glutathione S-transferase mutant SbGSTU6(I... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7dw4 | ||||||
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Title | Crystal structure of a glutathione S-transferase mutant SbGSTU6(I55T) from Salix babylonica in complex with glutathione | ||||||
![]() | Glutathione S-transferase![]() | ||||||
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Function / homology | ![]() response to chemical / ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zhuge, X.L. / Yang, H.L. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal structure of a glutathione S-transferase mutant SbGSTU6(I55T) from Salix babylonica in complex with glutathione Authors: Zhuge, X.L. / Yang, H.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 64.5 KB | Display | ![]() |
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PDB format | ![]() | 43.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 7dw3S S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | ![]() Mass: 26342.508 Da / Num. of mol.: 1 / Mutation: I55T Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-GSH / ![]() |
#3: Water | ChemComp-HOH / ![]() |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.17 Å3/Da / Density % sol: 61.15 % |
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Crystal grow![]() | Temperature: 289.15 K / Method: vapor diffusion, hanging drop / pH: 7.4 Details: Magnesium acetate tetrahydrate, Sodium cacodylate trihydrate, PEG8000 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Dec 1, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.57→34.42 Å / Num. obs: 46154 / % possible obs: 99.4 % / Redundancy: 1 % / Biso Wilson estimate: 26.78 Å2 / CC1/2: 1 / Net I/σ(I): 1.74 |
Reflection shell | Resolution: 1.57→1.91 Å / Num. unique obs: 4387 / CC1/2: 1 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 7DW3 Resolution: 1.57→34.42 Å / SU ML: 0.171 / Cross valid method: FREE R-VALUE / σ(F): 1.35 / Phase error: 28.1675 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 35.27 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.57→34.42 Å
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Refine LS restraints |
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LS refinement shell |
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