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- PDB-7alu: NMR structure of a DNA G-quadruplex containing two SP1 binding si... -
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Basic information
Entry | Database: PDB / ID: 7alu | ||||||||||||||||||||||||||||
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Title | NMR structure of a DNA G-quadruplex containing two SP1 binding sites from HIV-1 promoter | ||||||||||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / Virus / HIV-1 / G-quadruplex / SP1 | Function / homology | : / DNA / DNA (> 10) | ![]() Biological species | ![]() ![]() Method | SOLUTION NMR / molecular dynamics | ![]() De Rache, A. / Marquevielle, J. / Amrane, S. | Funding support | | ![]()
![]() ![]() Title: Structure of a DNA G-quadruplex that modulates SP1 binding sites architecture in HIV-1 promoter. Authors: De Rache, A. / Marquevielle, J. / Bouaziz, S. / Vialet, B. / Andreola, M.L. / Mergny, J.L. / Amrane, S. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 148.2 KB | Display | ![]() |
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PDB format | ![]() | 119.1 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 392.4 KB | Display | ![]() |
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Full document | ![]() | 642.3 KB | Display | |
Data in XML | ![]() | 32.7 KB | Display | |
Data in CIF | ![]() | 40.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 6970.461 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) ![]() ![]() | ||
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#2: Chemical | Has ligand of interest | N | |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 70 KCl; 20 KPi mM / Label: HIVpro3 / pH: 6.9 Not defined / Pressure: 1 atm / Temperature: 293 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 4 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 750 / Conformers submitted total number: 10 |