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万見

- PDB-6zzg: MB_CRS6-1 bound to CrSAS-6_N -

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データを開く

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基本情報

登録情報

データベース: PDB / ID: 6zzg

タイトル

MB_CRS6-1 bound to CrSAS-6_N

要素

Centriole protein
MB_CRS6-15

キーワード

PROTEIN BINDING / Centriole / Cartwheel / Ring-polymer / Monobody

機能・相同性

Spindle assembly abnormal protein 6, N-terminal / SAS-6, N-terminal domain superfamily / Centriolar protein SAS N-terminal domain / centriole / cell cycle / identical protein binding / cytoplasm / ACETATE ION / Centriole protein

機能・相同性情報

生物種

Chlamydomonas reinhardtii (クラミドモナス)

Mus musculus (ハツカネズミ)

手法

X線回折 /

シンクロトロン /

分子置換 / 解像度: 2.93 Å

データ登録者

Hatzopoulos, G.N. / Kukenshoner, T. / Banterle, N. / Favez, T. / Fluckiger, I. / Hantschel, O. / Gonczy, P.

資金援助

スイス, 2件

引用

ジャーナル: Nat Commun / 年: 2021
タイトル: Tuning SAS-6 architecture with monobodies impairs distinct steps of centriole assembly.
著者: Hatzopoulos, G.N. / Kukenshoner, T. / Banterle, N. / Favez, T. / Fluckiger, I. / Hamel, V. / Andany, S. / Fantner, G.E. / Hantschel, O. / Gonczy, P.

履歴

登録	2020年8月4日	登録サイト: PDBE / 処理サイト: PDBE
改定 1.0	2021年7月7日	Provider: repository / タイプ: Initial release
改定 1.1	2024年1月31日	Group: Data collection / Database references / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_ncs_dom_lim Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id

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構造の表示

構造ビューア	分子: MolmilJmol/JSmol

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ダウンロードとリンク

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ダウンロード

PDBx/mmCIF形式	6zzg.cif.gz	698.4 KB	表示	PDBx/mmCIF形式
PDB形式	pdb6zzg.ent.gz	488.3 KB	表示	PDB形式
PDBx/mmJSON形式	6zzg.json.gz		ツリー表示	PDBx/mmJSON形式
その他	その他のダウンロード

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検証レポート

文書・要旨	6zzg_validation.pdf.gz	411.3 KB	表示	wwPDB検証レポート
文書・詳細版	6zzg_full_validation.pdf.gz	428.3 KB	表示
XML形式データ	6zzg_validation.xml.gz	47.9 KB	表示
CIF形式データ	6zzg_validation.cif.gz	65.7 KB	表示
アーカイブディレクトリ	https://data.pdbj.org/pub/pdb/validation_reports/zz/6zzg ftp://data.pdbj.org/pub/pdb/validation_reports/zz/6zzg	HTTPS FTP

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関連構造データ

関連構造データ	6zz8C 6zzcC 6zzdC 3q0yS S: 精密化の開始モデル C: 同じ文献を引用 (文献)
類似構造データ	6zzg-4 6zzg-3 6zzg-5 3u02-5 6zzg-2 2fpl-d 3ew9-d 4aqc-2 4k2n-d 1qyu-d Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) 類似検索 - 機能・相同性F&H 検索類似検索 - 機能F&H 検索類似検索 - 相同性F&H 検索

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リンク

PDBのページ	PDBj / wwPDB / NCBI

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集合体

登録構造単位

A: Centriole protein

B: Centriole protein

C: Centriole protein

D: Centriole protein

E: Centriole protein

F: Centriole protein

G: MB_CRS6-15

H: MB_CRS6-15

I: MB_CRS6-15

J: MB_CRS6-15

K: MB_CRS6-15

L: MB_CRS6-15

ヘテロ分子

168 kDa, 12 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

A: Centriole protein

K: MB_CRS6-15

ヘテロ分子

登録者が定義した集合体
根拠: isothermal titration calorimetry
28 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

B: Centriole protein

J: MB_CRS6-15

ヘテロ分子

登録者が定義した集合体
28 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

C: Centriole protein

I: MB_CRS6-15

登録者が定義した集合体
27.9 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

D: Centriole protein

L: MB_CRS6-15

ヘテロ分子

登録者が定義した集合体
28 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

E: Centriole protein

H: MB_CRS6-15

登録者が定義した集合体
27.9 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

F: Centriole protein

G: MB_CRS6-15

登録者が定義した集合体
27.9 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

単位格子

Length a, b, c (Å)	164.451, 347.187, 94.851
Angle α, β, γ (deg.)	90.000, 90.000, 90.000
Int Tables number	20
Space group name H-M	C222₁
Space group name Hall	C2c2
Symmetry operation	#1: x,y,z #2: x,-y,-z #3: -x,y,-z+1/2 #4: -x,-y,z+1/2 #5: x+1/2,y+1/2,z #6: x+1/2,-y+1/2,-z #7: -x+1/2,y+1/2,-z+1/2 #8: -x+1/2,-y+1/2,z+1/2

非結晶学的対称性 (NCS)

NCSドメイン:

ID	Ens-ID
1	1
2	1
3	1
4	1
5	1
6	1
1	2
2	2
3	2
4	2
5	2
6	2

NCSドメイン領域:

Dom-ID	Component-ID	Ens-ID	Beg auth comp-ID	Beg label comp-ID	End auth comp-ID	End label comp-ID	Selection details	Auth asym-ID	Label asym-ID	Auth seq-ID	Label seq-ID
1	1	1	GLY	GLY	LYS	LYS	(chain 'A' and (resid 15 through 90 or resid 92 through 159))	A	A	15 - 90	16 - 91
1	2	1	ASP	ASP	ASN	ASN	(chain 'A' and (resid 15 through 90 or resid 92 through 159))	A	A	92 - 159	93 - 160
2	3	1	GLY	GLY	LYS	LYS	(chain 'B' and (resid 15 through 90 or resid 92 through 159))	B	B	15 - 90	16 - 91
2	4	1	ASP	ASP	ASN	ASN	(chain 'B' and (resid 15 through 90 or resid 92 through 159))	B	B	92 - 159	93 - 160
3	5	1	GLY	GLY	LYS	LYS	(chain 'C' and (resid 15 through 90 or resid 92 through 159))	C	C	15 - 90	16 - 91
3	6	1	ASP	ASP	ASN	ASN	(chain 'C' and (resid 15 through 90 or resid 92 through 159))	C	C	92 - 159	93 - 160
4	7	1	GLY	GLY	LYS	LYS	(chain 'D' and (resid 15 through 90 or resid 92 through 159))	D	D	15 - 90	16 - 91
4	8	1	ASP	ASP	ASN	ASN	(chain 'D' and (resid 15 through 90 or resid 92 through 159))	D	D	92 - 159	93 - 160
5	9	1	GLY	GLY	LYS	LYS	(chain 'E' and (resid 15 through 90 or resid 92 through 159))	E	E	15 - 90	16 - 91
5	10	1	ASP	ASP	ASN	ASN	(chain 'E' and (resid 15 through 90 or resid 92 through 159))	E	E	92 - 159	93 - 160
6	11	1	GLY	GLY	LYS	LYS	(chain 'F' and (resid 15 through 90 or resid 92 through 159))	F	F	15 - 90	16 - 91
6	12	1	ASP	ASP	ASN	ASN	(chain 'F' and (resid 15 through 90 or resid 92 through 159))	F	F	92 - 159	93 - 160
1	13	2	VAL	VAL	THR	THR	(chain 'G' and (resid 1 through 91 or (resid 92...	G	G	1 - 92	3 - 94
2	14	2	VAL	VAL	THR	THR	(chain 'H' and resid 1 through 92)	H	H	1 - 92	3 - 94
3	15	2	VAL	VAL	THR	THR	chain 'I'	I	I	1 - 92	3 - 94
4	16	2	VAL	VAL	THR	THR	(chain 'J' and (resid 1 through 91 or (resid 92...	J	J	1 - 92	3 - 94
5	17	2	VAL	VAL	THR	THR	(chain 'K' and resid 1 through 92)	K	K	1 - 92	3 - 94
6	18	2	VAL	VAL	THR	THR	(chain 'L' and (resid 1 through 91 or (resid 92...	L	L	1 - 92	3 - 94

NCSアンサンブル:

ID
1
2

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要素

#1: タンパク質	Centriole protein 分子量: 18016.543 Da / 分子数: 6 / 由来タイプ: 組換発現由来: (組換発現) Chlamydomonas reinhardtii (クラミドモナス) 遺伝子: CrSAS-6, CHLRE_12g516950v5 発現宿主: Escherichia coli 'BL21-Gold(DE3)pLysS AG' (大腸菌) 参照: UniProt: A9CQL4
#2: タンパク質	MB_CRS6-15 分子量: 9896.027 Da / 分子数: 6 / 由来タイプ: 組換発現 / 由来: (組換発現) Mus musculus (ハツカネズミ) 発現宿主: Escherichia coli 'BL21-Gold(DE3)pLysS AG' (大腸菌)
#3: 化合物	ChemComp-ACT / ACETATE ION / 酢酸イオン分子量: 59.044 Da / 分子数: 5 / 由来タイプ: 合成 / 式: C₂H₃O₂
#4: 水	ChemComp-HOH / water 分子量: 18.015 Da / 分子数: 24 / 由来タイプ: 天然 / 式: H₂O
研究の焦点であるリガンドがあるか	N

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実験情報

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実験

実験	手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶	マシュー密度: 4.04 Å³/Da / 溶媒含有率: 69.57 %
結晶化	温度: 291 K / 手法: 蒸気拡散法, シッティングドロップ法詳細: 0.3 M Sodium acetate trihydrate, 10%w/vPEG8000, 10%w/v PEG 1000, 4% v/v 1,1,1,3,3,3-Hexafluoro-2-propanol, 0.1 M Tris pH 8.5

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データ収集

回折	平均測定温度: 100 K / Serial crystal experiment: N
放射光源	由来: シンクロトロン / サイト: SLS / ビームライン: X06DA / 波長: 1 Å
検出器	タイプ: PSI PILATUS 6M / 検出器: PIXEL / 日付: 2018年7月23日
放射	プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長	波長: 1 Å / 相対比: 1
反射	解像度: 2.93→49.4 Å / Num. obs: 273558 / % possible obs: 99.5 % / 冗長度: 4.5 % / B_iso Wilson estimate: 72.12 Å² / CC_1/2: 0.998 / Net I/σ(I): 5.98
反射シェル	解像度: 2.93→3.07 Å / Num. unique obs: 9570 / CC_1/2: 0.517

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解析

ソフトウェア

名称	バージョン	分類
PHENIX	1.15_3459	精密化
XDS		データ削減
XDS		データスケーリング
MOLREP		位相決定

精密化

構造決定の手法:

分子置換
開始モデル: 3q0y

3q0y

解像度: 2.93→49.4 Å / SU ML: 0.4534 / 交差検証法: FREE R-VALUE / σ(F): 1.28 / 位相誤差: 29.963
立体化学のターゲット値: GeoStd + Monomer Library + CDL v1.2

	R_factor	反射数	%反射
R_free	0.2538	5664	5.02 %
R_work	0.2212	107138	-
obs	0.2228	112802	99.63 %

溶媒の処理

減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL

原子変位パラメータ

B_iso mean: 83.39 Å²

精密化ステップ

サイクル: LAST / 解像度: 2.93→49.4 Å

	タンパク質	核酸	リガンド	溶媒	全体
原子数	11149	0	20	24	11193

拘束条件

Refine-ID	タイプ	Dev ideal	数
X-RAY DIFFRACTION	f_bond_d	0.0034	11425
X-RAY DIFFRACTION	f_angle_d	0.7825	15560
X-RAY DIFFRACTION	f_chiral_restr	0.0511	1830
X-RAY DIFFRACTION	f_plane_restr	0.0068	1991
X-RAY DIFFRACTION	f_dihedral_angle_d	12.9184	6822

LS精密化シェル

解像度 (Å)	R_factor R_free	Num. reflection R_free	R_factor R_work	Num. reflection R_work	Refine-ID	% reflection obs (%)
2.93-2.96	0.389	182	0.391	3404	X-RAY DIFFRACTION	94.15
2.96-2.99	0.4238	188	0.3694	3537	X-RAY DIFFRACTION	99.28
2.99-3.03	0.3682	185	0.3579	3509	X-RAY DIFFRACTION	99.3
3.03-3.07	0.4033	196	0.3596	3645	X-RAY DIFFRACTION	99.59
3.07-3.11	0.3915	187	0.3642	3548	X-RAY DIFFRACTION	99.73
3.11-3.15	0.3754	187	0.3684	3596	X-RAY DIFFRACTION	99.55
3.15-3.2	0.3612	186	0.3647	3549	X-RAY DIFFRACTION	99.52
3.2-3.24	0.3749	186	0.3515	3581	X-RAY DIFFRACTION	99.89
3.24-3.3	0.3503	190	0.3092	3594	X-RAY DIFFRACTION	99.84
3.3-3.35	0.3326	187	0.3032	3568	X-RAY DIFFRACTION	99.84
3.35-3.41	0.3715	187	0.2875	3556	X-RAY DIFFRACTION	99.95
3.41-3.47	0.3274	186	0.2784	3570	X-RAY DIFFRACTION	99.89
3.47-3.54	0.335	186	0.2682	3591	X-RAY DIFFRACTION	99.95
3.54-3.61	0.3048	191	0.2687	3540	X-RAY DIFFRACTION	99.76
3.61-3.69	0.3179	195	0.2623	3605	X-RAY DIFFRACTION	99.69
3.69-3.77	0.3031	193	0.259	3596	X-RAY DIFFRACTION	99.76
3.77-3.87	0.2649	190	0.2417	3577	X-RAY DIFFRACTION	100
3.87-3.97	0.2435	186	0.2217	3601	X-RAY DIFFRACTION	100
3.97-4.09	0.2542	188	0.2095	3564	X-RAY DIFFRACTION	100
4.09-4.22	0.209	185	0.1978	3595	X-RAY DIFFRACTION	99.97
4.22-4.37	0.1957	190	0.1744	3567	X-RAY DIFFRACTION	100
4.37-4.55	0.1987	191	0.1635	3578	X-RAY DIFFRACTION	100
4.55-4.75	0.2035	187	0.1555	3631	X-RAY DIFFRACTION	100
4.75-5	0.1826	188	0.1558	3585	X-RAY DIFFRACTION	100
5-5.32	0.1928	190	0.1579	3553	X-RAY DIFFRACTION	100
5.32-5.72	0.2025	195	0.1726	3563	X-RAY DIFFRACTION	99.95
5.72-6.3	0.2269	193	0.1868	3613	X-RAY DIFFRACTION	99.95
6.3-7.21	0.2384	189	0.2048	3547	X-RAY DIFFRACTION	99.97
7.21-9.07	0.2076	193	0.1709	3582	X-RAY DIFFRACTION	100
9.07-49.4	0.1923	187	0.1812	3593	X-RAY DIFFRACTION	99.47

精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

ID	L11 (°²)	L12 (°²)	L13 (°²)	L22 (°²)	L23 (°²)	L33 (°²)	S11 (Å °)	S12 (Å °)	S13 (Å °)	S21 (Å °)	S22 (Å °)	S23 (Å °)	S31 (Å °)	S32 (Å °)	S33 (Å °)	T11 (Å²)	T12 (Å²)	T13 (Å²)	T22 (Å²)	T23 (Å²)	T33 (Å²)	Origin x (Å)	Origin y (Å)	Origin z (Å)
1	4.99481802539	0.970797630216	3.52807936899	5.86680138367	2.00826131888	3.06858860799	-1.8000217481	-1.75240809492	-1.97620834589	-1.50480701088	-0.0225644660619	-1.53195850111	-1.34477734715	0.446570010445	1.73143950613	1.11154019649	-0.0110818367967	0.279684063218	0.723857093439	0.0319122029315	1.3378227381	24.3340720399	81.8550537103	-0.348150337639
2	8.14690264904	1.934198971	1.33616730384	5.37020964816	-2.05142664637	4.25233600771	-0.0236114508379	0.0354276819358	-0.0899821627166	-0.183653781575	-0.0383279077598	0.438638029956	-0.550730471311	-0.351597524714	-0.012020240972	0.549723921136	0.150301781013	0.0360444433337	0.367542482536	0.0497656834668	0.480934069978	16.9691113208	69.4802180252	-14.6175649233
3	8.08726722342	1.75436233524	2.66845396324	6.92365215729	0.298670739228	5.11195803698	0.277290221067	-0.939755548537	-0.513308842921	0.551169550205	-0.252524197429	0.56804187984	-0.170150125043	-0.945045669022	-0.275482658949	0.756208026908	-0.00255449861138	0.0831509928747	0.544079958222	0.0047662183207	0.432732322037	13.2382877685	67.3116106733	-11.0370328615
4	6.60445736942	1.81571787833	0.124842691261	3.2414624129	-1.67998067728	3.21581564526	0.593960070097	-1.38576521544	-0.919394997778	1.51924939348	0.0219828284178	-0.63325746366	-0.65490482696	0.0639160486124	0.21782040352	1.22011816617	0.0489866212384	0.0508028644393	0.641351146166	-0.040219099392	0.705209013735	25.6985266161	75.5629249797	-0.015453506176
5	7.43714168956	-1.16579982221	0.698735710879	2.40831105949	-0.396473458026	3.63252384119	-0.0407728417331	-0.00442687640809	-0.234190479199	0.136420981699	0.092013704965	-0.102011323673	0.215608457639	0.123826848401	0.044316163483	0.478182427266	-0.0274141667486	0.119056997849	0.243917236392	0.00331636551622	0.447530915108	24.4739662641	65.4690569283	-10.4204968069
6	9.15944493819	-4.53484327981	-6.01602870228	2.4193510109	2.27126039073	2.74831409653	0.348020973241	0.107403372774	-0.233150016375	0.0106657655146	-0.286525830989	0.344701341752	0.285973316758	-0.248942147173	-0.272887919061	0.674965357408	0.0368018980259	0.114947850328	0.508748119697	0.0370146540807	0.52869420612	18.2740900086	55.9813701848	-13.2634808101
7	7.07514987945	-0.621334761277	-0.52378437274	7.58050833919	-3.53523453825	3.60496362098	-0.505105087293	-1.02236672777	-0.12178329572	1.52868456746	0.451167860625	0.638744141482	0.203148051307	0.117016526138	-0.102777165551	0.664181009339	-0.012460514525	0.00627242561667	0.470719482092	0.0958319007936	0.426892760439	20.0962890334	61.8181319712	-7.25861668688
8	2.90134331387	-0.861321639462	1.8167456612	3.61518964457	0.228619783034	4.81551150562	0.216784992283	0.173912832942	-0.152935353646	0.0214384781912	-0.461711684683	-0.417128374091	0.712663460077	0.373352333608	0.137975216918	0.755832608463	-0.094395276695	-0.0211635613739	0.442168223592	0.0533898358838	0.721911645869	60.0824941273	9.72950875477	7.50508704013
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83	6.85759909668	2.13940510798	-0.209112188052	2.56632147381	0.120727787833	2.5603579191	-0.239205593361	0.325308460745	-0.899651888334	-1.93971218831	0.189456191305	1.19765641835	-0.130738991042	1.44469675967	0.192408949027	0.677515110564	-0.0461576035769	-0.00404158936478	0.470667699745	-0.083575674322	0.584752450467	23.2584412065	78.9440310821	-26.4667727224
84	5.25606335205	-1.40798211345	-0.505940864226	1.31128535585	-1.56764416515	6.40951393939	0.318309707561	-0.464359088241	0.424602089668	0.769508152672	-0.345555410033	0.380869978579	-0.679713752421	-0.0873189256152	0.231021833367	0.468222274656	-0.0389600224839	0.0982339930333	0.508414899169	-0.0270776248015	0.688821295026	24.6716891391	96.0844361168	-17.1168043602
85	3.82474225399	-3.4321399057	1.32438931711	5.21567389932	-2.78241051153	7.69128191446	-0.285516951285	-0.0829281283585	1.18550936875	0.877770505287	0.560362839945	1.35442610561	-0.389659374893	-0.24994433501	-0.0947548900713	0.612306616641	-0.059809058129	0.0191812368979	0.474967739254	0.0270440991381	1.05532144467	17.2873307917	92.0341360468	-18.7664523394
86	5.45597029702	-1.32443550624	-0.816564266972	3.89398403242	1.21946176315	4.76594852308	0.499882564701	-0.205069478189	0.385454135954	-0.448472703785	-0.203634050563	0.951049587796	-0.523110408319	-0.125963012191	-0.565116717985	0.287394998659	-0.036123014696	0.0595135141411	0.593591334599	-0.0281517272504	0.655410760746	24.7843816647	93.4355780981	-22.2363193992
87	3.37788613401	0.630005016487	2.84022649835	5.06542874313	-0.681470424089	2.47273924705	-0.0906215820848	-0.225026661184	0.908618351286	-0.908627684669	0.406123365069	-1.00432599391	-0.200289244802	-0.169860846553	-0.239148156594	0.749244005234	-0.0661626216842	0.00584341869294	0.53948465365	0.0646892406102	0.807099543624	27.1552745052	88.952510118	-23.506674917
88	2.42893196	-1.84951169091	2.77847686361	4.72600380335	-5.0782870902	5.47868755976	-1.42431410479	-0.800981386418	-0.235628107703	0.538404984232	0.868256770474	-0.498492023495	0.147537460344	-1.30487484274	0.125934764985	1.00563798027	0.148039165889	-0.0341894328153	0.515796659566	-0.120883980042	0.515001150825	42.2462158359	30.1914940647	-38.2260041086
89	1.84613984838	-2.60298802286	0.411710693163	6.76079483308	1.19263672873	1.20491145403	0.350610817669	0.860533031578	-0.0967910345152	-2.38346060553	-0.949034191041	-0.458780950223	1.40800605571	-0.468846148188	0.119605174943	0.721613160142	0.0274692010388	0.0937575248369	0.613048643579	0.0772300438587	0.523927880276	53.2250558669	14.4498208859	-29.9128124743
90	6.66128326549	-1.93164566682	-0.56635990576	4.36461757232	2.79449448542	4.37479396844	0.178512479773	0.180781373256	-0.262940749813	-0.771261573925	-0.430427751551	-0.510433608278	0.406046205918	-0.285092854211	0.293789087015	0.571053078659	0.114815578258	0.0192529230228	0.48211724608	-0.0395030546067	0.355105007148	40.3791194872	19.9401534076	-29.8789195108
91	1.92332193925	-3.13523727266	-0.255702282025	5.785221204	-0.271561663325	1.17804856368	0.349008507417	0.158273462977	0.097785183985	-0.818302680416	0.109741064576	0.91506974186	0.245462241103	-0.101246264627	-0.0566125038547	0.736456652381	-0.0853724314695	-0.036770175551	0.426621059065	-0.0532495291067	0.524052923453	44.3180754094	21.047117013	-24.2426640071
92	6.23907587039	-3.94329754862	-1.54976247226	3.33750889085	0.445540186115	2.35708693852	-0.897598896617	1.80535862604	-2.10991927313	0.784536013217	-0.073194348945	0.125598471584	0.900833584068	-0.28884207667	-0.0526902731874	1.0219409637	-0.0188405817229	-0.195078022832	0.47645756226	0.0617093107213	0.151727889528	43.882098318	11.8144377142	-30.6707316081
93	5.47166074771	1.50909604568	-0.300470198802	3.29685633443	-3.97260218167	5.63311584403	0.752924246721	0.981534285108	-0.280774557802	-0.843980747056	-1.56931378363	1.21437827169	1.62758700852	1.00592660869	-0.39895148325	0.714376621562	-0.0414381537663	-0.200450557135	0.603350083339	0.0773530017604	0.471583294662	33.2565042709	28.0036316674	-31.4652555264
94	1.65349967279	0.935197921901	0.311458826545	1.47847464605	-0.657992701585	0.729026196879	-0.599578450836	0.574797211141	-1.47429211729	-2.78740387902	-2.01283467162	-1.14962202861	0.47954034974	1.16735211563	-0.473304261633	1.30527610275	0.13847238709	-0.232267077599	0.513991276448	-0.419258946949	0.111373373464	47.6046115963	11.921953722	-36.1803049608

精密化 TLSグループ

ID	Refine-ID	Refine TLS-ID	Selection details
1	X-RAY DIFFRACTION	1	chain 'A' and (resid 15 through 21 )
2	X-RAY DIFFRACTION	2	chain 'A' and (resid 22 through 35 )
3	X-RAY DIFFRACTION	3	chain 'A' and (resid 36 through 54 )
4	X-RAY DIFFRACTION	4	chain 'A' and (resid 55 through 68 )
5	X-RAY DIFFRACTION	5	chain 'A' and (resid 69 through 122 )
6	X-RAY DIFFRACTION	6	chain 'A' and (resid 123 through 146 )
7	X-RAY DIFFRACTION	7	chain 'A' and (resid 147 through 159 )
8	X-RAY DIFFRACTION	8	chain 'B' and (resid 15 through 35 )
9	X-RAY DIFFRACTION	9	chain 'B' and (resid 36 through 53 )
10	X-RAY DIFFRACTION	10	chain 'B' and (resid 54 through 60 )
11	X-RAY DIFFRACTION	11	chain 'B' and (resid 61 through 68 )
12	X-RAY DIFFRACTION	12	chain 'B' and (resid 69 through 122 )
13	X-RAY DIFFRACTION	13	chain 'B' and (resid 123 through 131 )
14	X-RAY DIFFRACTION	14	chain 'B' and (resid 132 through 142 )
15	X-RAY DIFFRACTION	15	chain 'B' and (resid 143 through 159 )
16	X-RAY DIFFRACTION	16	chain 'C' and (resid 15 through 20 )
17	X-RAY DIFFRACTION	17	chain 'C' and (resid 21 through 35 )
18	X-RAY DIFFRACTION	18	chain 'C' and (resid 36 through 53 )
19	X-RAY DIFFRACTION	19	chain 'C' and (resid 54 through 60 )
20	X-RAY DIFFRACTION	20	chain 'C' and (resid 61 through 68 )
21	X-RAY DIFFRACTION	21	chain 'C' and (resid 69 through 75 )
22	X-RAY DIFFRACTION	22	chain 'C' and (resid 76 through 114 )
23	X-RAY DIFFRACTION	23	chain 'C' and (resid 115 through 122 )
24	X-RAY DIFFRACTION	24	chain 'C' and (resid 123 through 146 )
25	X-RAY DIFFRACTION	25	chain 'C' and (resid 147 through 159 )
26	X-RAY DIFFRACTION	26	chain 'D' and (resid 15 through 21 )
27	X-RAY DIFFRACTION	27	chain 'D' and (resid 22 through 35 )
28	X-RAY DIFFRACTION	28	chain 'D' and (resid 36 through 53 )
29	X-RAY DIFFRACTION	29	chain 'D' and (resid 54 through 68 )
30	X-RAY DIFFRACTION	30	chain 'D' and (resid 69 through 122 )
31	X-RAY DIFFRACTION	31	chain 'D' and (resid 123 through 131 )
32	X-RAY DIFFRACTION	32	chain 'D' and (resid 132 through 146 )
33	X-RAY DIFFRACTION	33	chain 'D' and (resid 147 through 159 )
34	X-RAY DIFFRACTION	34	chain 'E' and (resid 15 through 21 )
35	X-RAY DIFFRACTION	35	chain 'E' and (resid 22 through 53 )
36	X-RAY DIFFRACTION	36	chain 'E' and (resid 54 through 60 )
37	X-RAY DIFFRACTION	37	chain 'E' and (resid 61 through 68 )
38	X-RAY DIFFRACTION	38	chain 'E' and (resid 69 through 131 )
39	X-RAY DIFFRACTION	39	chain 'E' and (resid 132 through 159 )
40	X-RAY DIFFRACTION	40	chain 'F' and (resid 15 through 21 )
41	X-RAY DIFFRACTION	41	chain 'F' and (resid 22 through 35 )
42	X-RAY DIFFRACTION	42	chain 'F' and (resid 36 through 53 )
43	X-RAY DIFFRACTION	43	chain 'F' and (resid 54 through 60 )
44	X-RAY DIFFRACTION	44	chain 'F' and (resid 61 through 68 )
45	X-RAY DIFFRACTION	45	chain 'F' and (resid 69 through 98 )
46	X-RAY DIFFRACTION	46	chain 'F' and (resid 99 through 122 )
47	X-RAY DIFFRACTION	47	chain 'F' and (resid 123 through 131 )
48	X-RAY DIFFRACTION	48	chain 'F' and (resid 132 through 146 )
49	X-RAY DIFFRACTION	49	chain 'F' and (resid 147 through 159 )
50	X-RAY DIFFRACTION	50	chain 'G' and (resid 0 through 7 )
51	X-RAY DIFFRACTION	51	chain 'G' and (resid 8 through 13 )
52	X-RAY DIFFRACTION	52	chain 'G' and (resid 14 through 22 )
53	X-RAY DIFFRACTION	53	chain 'G' and (resid 23 through 38 )
54	X-RAY DIFFRACTION	54	chain 'G' and (resid 39 through 45 )
55	X-RAY DIFFRACTION	55	chain 'G' and (resid 46 through 59 )
56	X-RAY DIFFRACTION	56	chain 'G' and (resid 60 through 76 )
57	X-RAY DIFFRACTION	57	chain 'G' and (resid 77 through 84 )
58	X-RAY DIFFRACTION	58	chain 'G' and (resid 85 through 92 )
59	X-RAY DIFFRACTION	59	chain 'H' and (resid 0 through 7 )
60	X-RAY DIFFRACTION	60	chain 'H' and (resid 8 through 22 )
61	X-RAY DIFFRACTION	61	chain 'H' and (resid 23 through 30 )
62	X-RAY DIFFRACTION	62	chain 'H' and (resid 31 through 38 )
63	X-RAY DIFFRACTION	63	chain 'H' and (resid 39 through 45 )
64	X-RAY DIFFRACTION	64	chain 'H' and (resid 46 through 51 )
65	X-RAY DIFFRACTION	65	chain 'H' and (resid 52 through 66 )
66	X-RAY DIFFRACTION	66	chain 'H' and (resid 67 through 84 )
67	X-RAY DIFFRACTION	67	chain 'H' and (resid 85 through 92 )
68	X-RAY DIFFRACTION	68	chain 'I' and (resid 1 through 8 )
69	X-RAY DIFFRACTION	69	chain 'I' and (resid 9 through 13 )
70	X-RAY DIFFRACTION	70	chain 'I' and (resid 14 through 21 )
71	X-RAY DIFFRACTION	71	chain 'I' and (resid 22 through 38 )
72	X-RAY DIFFRACTION	72	chain 'I' and (resid 39 through 45 )
73	X-RAY DIFFRACTION	73	chain 'I' and (resid 46 through 51 )
74	X-RAY DIFFRACTION	74	chain 'I' and (resid 52 through 59 )
75	X-RAY DIFFRACTION	75	chain 'I' and (resid 60 through 66 )
76	X-RAY DIFFRACTION	76	chain 'I' and (resid 67 through 75 )
77	X-RAY DIFFRACTION	77	chain 'I' and (resid 76 through 84 )
78	X-RAY DIFFRACTION	78	chain 'I' and (resid 85 through 92 )
79	X-RAY DIFFRACTION	79	chain 'J' and (resid 0 through 45 )
80	X-RAY DIFFRACTION	80	chain 'J' and (resid 46 through 92 )
81	X-RAY DIFFRACTION	81	chain 'K' and (resid 0 through 8 )
82	X-RAY DIFFRACTION	82	chain 'K' and (resid 9 through 21 )
83	X-RAY DIFFRACTION	83	chain 'K' and (resid 22 through 30 )
84	X-RAY DIFFRACTION	84	chain 'K' and (resid 31 through 45 )
85	X-RAY DIFFRACTION	85	chain 'K' and (resid 46 through 66 )
86	X-RAY DIFFRACTION	86	chain 'K' and (resid 67 through 75 )
87	X-RAY DIFFRACTION	87	chain 'K' and (resid 76 through 92 )
88	X-RAY DIFFRACTION	88	chain 'L' and (resid -1 through 8 )
89	X-RAY DIFFRACTION	89	chain 'L' and (resid 9 through 21 )
90	X-RAY DIFFRACTION	90	chain 'L' and (resid 22 through 45 )
91	X-RAY DIFFRACTION	91	chain 'L' and (resid 46 through 59 )
92	X-RAY DIFFRACTION	92	chain 'L' and (resid 60 through 75 )
93	X-RAY DIFFRACTION	93	chain 'L' and (resid 76 through 85 )
94	X-RAY DIFFRACTION	94	chain 'L' and (resid 86 through 92 )

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

すべてのお知らせ

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る

-
ムービー

-
構造ビューア

+
ビューアのログ

-
このページ

-
このウェブサイト

-
オプション

+
データを開く

-
基本情報

-
構造の表示

-
ダウンロードとリンク

-
ダウンロード

-
検証レポート

-
関連構造データ

-
リンク

-
集合体

-
要素

-
実験情報

-
実験

-
試料調製

-
データ収集

-
解析

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-
2020年8月12日: 新型コロナ情報

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

-
万見 (Yorodumi)

-ムービー

-構造ビューア

+ビューアのログ

-このページ

-このウェブサイト

-オプション

+データを開く

-基本情報

-構造の表示

-ダウンロードとリンク

-ダウンロード

-検証レポート

-関連構造データ

-リンク

-集合体

-要素

-実験情報

-実験

-試料調製

-データ収集

-解析

+万見について

-お知らせ

-2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-2020年8月12日: 新型コロナ情報

+2020年3月5日: 新型コロナウイルスの構造データ

+2019年1月31日: EMDBのIDの桁数の変更

+2017年7月12日: PDB大規模アップデート

-万見 (Yorodumi)

-
ムービー

-
構造ビューア

+
ビューアのログ

-
このページ

-
このウェブサイト

-
オプション

+
データを開く

-
基本情報

-
構造の表示

-
ダウンロードとリンク

-
ダウンロード

-
検証レポート

-
関連構造データ

-
リンク

-
集合体

-
要素

-
実験情報

-
実験

-
試料調製

-
データ収集

-
解析

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-
2020年8月12日: 新型コロナ情報

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

-
万見 (Yorodumi)