- PDB-6zhv: Crystal structure of OmpF porin soaked in ciprofloxacin metaloant... -
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Basic information
Entry
Database: PDB / ID: 6zhv
Title
Crystal structure of OmpF porin soaked in ciprofloxacin metaloantibiotic
Components
Outer membrane porin F
Keywords
MEMBRANE PROTEIN / OmpF / porin
Function / homology
Function and homology information
colicin transmembrane transporter activity / monoatomic ion channel complex / porin activity / pore complex / protein homotrimerization / monoatomic ion transmembrane transport / lipopolysaccharide binding / cell outer membrane / disordered domain specific binding / protein transport ...colicin transmembrane transporter activity / monoatomic ion channel complex / porin activity / pore complex / protein homotrimerization / monoatomic ion transmembrane transport / lipopolysaccharide binding / cell outer membrane / disordered domain specific binding / protein transport / monoatomic ion channel activity / lipid binding / identical protein binding / membrane Similarity search - Function
Porin, gammaproteobacterial / : / Porin, Gram-negative type, conserved site / General diffusion Gram-negative porins signature. / Porin domain, Gram-negative type / Gram-negative porin / Porin, Gram-negative type / Porin domain superfamily Similarity search - Domain/homology
OutermembraneporinF / Outer membrane protein 1A / Outer membrane protein B / Outer membrane protein F / Outer membrane ...Outer membrane protein 1A / Outer membrane protein B / Outer membrane protein F / Outer membrane protein IA / Porin OmpF
Mass: 39365.043 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (strain K12) (bacteria) Gene: ompF, cmlB, coa, cry, tolF, b0929, JW0912 / Plasmid: pRSF-1b / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: P02931
Resolution: 1.945→45.296 Å / FOM work R set: 0.8354 / SU ML: 0.24 / Cross valid method: THROUGHOUT / σ(F): 1.35 / Phase error: 23.43 / Stereochemistry target values: ML
Rfactor
Num. reflection
% reflection
Rfree
0.2326
4172
4.98 %
Rwork
0.1976
79533
-
obs
0.1994
83705
99.48 %
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
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