+Open data
-Basic information
Entry | Database: PDB / ID: 6y8w | ||||||
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Title | Rhodospirillum rubrum reduced CooT solution structure | ||||||
Components | CooT | ||||||
Keywords | METAL BINDING PROTEIN / NICKEL-BINDING PROTEIN / ANAEROBIC METABOLISM | ||||||
Function / homology | CO dehydrogenase accessory protein CooT / CO dehydrogenase accessory protein CooT / CooT Function and homology information | ||||||
Biological species | Rhodospirillum rubrum (bacteria) | ||||||
Method | SOLUTION NMR / molecular dynamics | ||||||
Authors | Chagot, B. | ||||||
Citation | Journal: To Be Published Title: Rhodospirillum rubrum reduced CooT solution structure Authors: Chagot, B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6y8w.cif.gz | 806.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6y8w.ent.gz | 684.5 KB | Display | PDB format |
PDBx/mmJSON format | 6y8w.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6y8w_validation.pdf.gz | 410.8 KB | Display | wwPDB validaton report |
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Full document | 6y8w_full_validation.pdf.gz | 553.5 KB | Display | |
Data in XML | 6y8w_validation.xml.gz | 38.1 KB | Display | |
Data in CIF | 6y8w_validation.cif.gz | 68.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/y8/6y8w ftp://data.pdbj.org/pub/pdb/validation_reports/y8/6y8w | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 7403.457 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Rhodospirillum rubrum (bacteria) / Gene: cooT / Production host: Escherichia coli (E. coli) / References: UniProt: P72320 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 1 mM [U-13C; U-15N] CooT, 90% H2O/10% D2O, 5 mM EDTA, 0.5 mM TCEP Label: 13C_15N_sample / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 1 mM / Component: CooT / Isotopic labeling: [U-13C; U-15N] |
Sample conditions | Ionic strength: 0.1 M / Label: conditions_1 / pH: 6.0 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 4 | ||||||||||||||||||
NMR representative | Selection criteria: fewest violations | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 50 / Conformers submitted total number: 20 |