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Yorodumi- PDB-6w8t: Crystal structure of metacaspase 4 from Arabidopsis (microcrystal... -
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-Basic information
Entry | Database: PDB / ID: 6w8t | ||||||
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Title | Crystal structure of metacaspase 4 from Arabidopsis (microcrystals treated with calcium) | ||||||
Components | Metacaspase-4 | ||||||
Keywords | PLANT PROTEIN / HYDROLASE / metacaspase / protease / Ca2+-dependent activation / microcrystals / plant immunity | ||||||
Function / homology | Function and homology information plasmodesma / positive regulation of programmed cell death / protein autoprocessing / cysteine-type peptidase activity / defense response / Hydrolases; Acting on peptide bonds (peptidases); Cysteine endopeptidases / cysteine-type endopeptidase activity / mitochondrion / identical protein binding / plasma membrane ...plasmodesma / positive regulation of programmed cell death / protein autoprocessing / cysteine-type peptidase activity / defense response / Hydrolases; Acting on peptide bonds (peptidases); Cysteine endopeptidases / cysteine-type endopeptidase activity / mitochondrion / identical protein binding / plasma membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Arabidopsis thaliana (thale cress) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.2 Å | ||||||
Authors | Zhu, P. / Yu, X.H. / Wang, C. / Zhang, Q. / Liu, W. / McSweeney, S. / Shanklin, J. / Lam, E. / Liu, Q. | ||||||
Funding support | United States, 1items
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Citation | Journal: Nat Commun / Year: 2020 Title: Structural basis for Ca2+-dependent activation of a plant metacaspase. Authors: Zhu, P. / Yu, X.H. / Wang, C. / Zhang, Q. / Liu, W. / McSweeney, S. / Shanklin, J. / Lam, E. / Liu, Q. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6w8t.cif.gz | 275.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6w8t.ent.gz | 224.6 KB | Display | PDB format |
PDBx/mmJSON format | 6w8t.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/w8/6w8t ftp://data.pdbj.org/pub/pdb/validation_reports/w8/6w8t | HTTPS FTP |
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-Related structure data
Related structure data | 6w8rSC 6w8sC S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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