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Yorodumi- PDB-6vpb: A novel membrane-bound 6-phosphogluconate dehydrogenase from the ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6vpb | ||||||
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Title | A novel membrane-bound 6-phosphogluconate dehydrogenase from the acetic acid bacteria Gluconacetobacter diazotrophicus (Gd6PGD) | ||||||
Components | 6-phosphogluconate dehydrogenase | ||||||
Keywords | OXIDOREDUCTASE / 6-phosphogluconate dehydrogenase / Gluconacetobacter diazotrophicus / membrane-bound protein / 6-phospho-D-gluconate / NAD+ | ||||||
Function / homology | Function and homology information D-gluconate metabolic process / phosphogluconate dehydrogenase (decarboxylating) activity / pentose-phosphate shunt / NADP binding Similarity search - Function | ||||||
Biological species | Gluconacetobacter diazotrophicus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SAD / Resolution: 1.87 Å | ||||||
Authors | Rodriguez-Romero, A. / Rodriguez-Hernandez, A. | ||||||
Funding support | Mexico, 1items
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Citation | Journal: Febs J. / Year: 2021 Title: The structure of a novel membrane-associated 6-phosphogluconate dehydrogenase from Gluconacetobacter diazotrophicus (Gd6PGD) reveals a subfamily of short-chain 6PGDs. Authors: Sarmiento-Pavia, P.D. / Rodriguez-Hernandez, A. / Rodriguez-Romero, A. / Sosa-Torres, M.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6vpb.cif.gz | 169.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6vpb.ent.gz | 107.2 KB | Display | PDB format |
PDBx/mmJSON format | 6vpb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6vpb_validation.pdf.gz | 446.1 KB | Display | wwPDB validaton report |
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Full document | 6vpb_full_validation.pdf.gz | 448.4 KB | Display | |
Data in XML | 6vpb_validation.xml.gz | 27 KB | Display | |
Data in CIF | 6vpb_validation.cif.gz | 39.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vp/6vpb ftp://data.pdbj.org/pub/pdb/validation_reports/vp/6vpb | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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Unit cell |
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Components on special symmetry positions |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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