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- PDB-6u37: Structure of VX-phosphonylated hAChE in complex with oxime reacti... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6u37 | ||||||
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Title | Structure of VX-phosphonylated hAChE in complex with oxime reactivator RS194B | ||||||
![]() | Acetylcholinesterase | ||||||
![]() | HYDROLASE / oxime reactivator complex / VX-phosphonylated conjugate | ||||||
Function / homology | ![]() negative regulation of synaptic transmission, cholinergic / Neurotransmitter clearance / acetylcholine catabolic process in synaptic cleft / cholinesterase activity / serine hydrolase activity / acetylcholine catabolic process / acetylcholine binding / amyloid precursor protein metabolic process / acetylcholinesterase / acetylcholine receptor signaling pathway ...negative regulation of synaptic transmission, cholinergic / Neurotransmitter clearance / acetylcholine catabolic process in synaptic cleft / cholinesterase activity / serine hydrolase activity / acetylcholine catabolic process / acetylcholine binding / amyloid precursor protein metabolic process / acetylcholinesterase / acetylcholine receptor signaling pathway / osteoblast development / acetylcholinesterase activity / choline metabolic process / Synthesis of PC / basement membrane / regulation of receptor recycling / Synthesis, secretion, and deacylation of Ghrelin / side of membrane / synaptic cleft / laminin binding / synapse assembly / collagen binding / positive regulation of protein secretion / neuromuscular junction / receptor internalization / : / retina development in camera-type eye / nervous system development / positive regulation of cold-induced thermogenesis / amyloid-beta binding / hydrolase activity / cell adhesion / synapse / perinuclear region of cytoplasm / Golgi apparatus / cell surface / protein homodimerization activity / extracellular space / extracellular region / membrane / nucleus / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kovalevsky, A. / Gerlits, O. / Radic, Z. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Rational design, synthesis, and evaluation of uncharged, "smart" bis-oxime antidotes of organophosphate-inhibited human acetylcholinesterase. Authors: Gorecki, L. / Gerlits, O. / Kong, X. / Cheng, X. / Blumenthal, D.K. / Taylor, P. / Ballatore, C. / Kovalevsky, A. / Radic, Z. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 229.3 KB | Display | ![]() |
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PDB format | ![]() | 181.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 931.1 KB | Display | ![]() |
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Full document | ![]() | 950 KB | Display | |
Data in XML | ![]() | 40.8 KB | Display | |
Data in CIF | ![]() | 57.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6u34C ![]() 6u3pC ![]() 6o66S S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
-Protein , 1 types, 2 molecules AB
#1: Protein | Mass: 60287.977 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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-Non-polymers , 5 types, 377 molecules ![](data/chem/img/VX.gif)
![](data/chem/img/PQV.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/NO3.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/PQV.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/NO3.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | #3: Chemical | #4: Chemical | ChemComp-GOL / #5: Chemical | #6: Water | ChemComp-HOH / | |
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-Details
Has ligand of interest | Y |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.87 Å3/Da / Density % sol: 74.73 % |
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Crystal grow | Temperature: 283 K / Method: vapor diffusion, sitting drop / pH: 7 Details: 10-20 mM sodium citrate, 100 mM HEPES, pH 7, 8-8.5 % PEG6000 and 100 mM potassium nitrate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 X 6M / Detector: PIXEL / Date: Oct 27, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9795 Å / Relative weight: 1 |
Reflection | Resolution: 2.25→40 Å / Num. obs: 97003 / % possible obs: 92.2 % / Redundancy: 1.9 % / CC1/2: 0.987 / Rmerge(I) obs: 0.063 / Rpim(I) all: 0.062 / Rrim(I) all: 0.088 / Net I/σ(I): 9.6 |
Reflection shell | Resolution: 2.25→2.33 Å / Redundancy: 1.8 % / Rmerge(I) obs: 0.594 / Num. unique obs: 9642 / CC1/2: 0.465 / Rpim(I) all: 0.584 / Rrim(I) all: 0.834 / % possible all: 91.4 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 6O66 Resolution: 2.25→40 Å / Cross valid method: FREE R-VALUE
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Refinement step | Cycle: LAST / Resolution: 2.25→40 Å
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