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Open data
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Basic information
Entry | Database: PDB / ID: 6tci | ||||||
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Title | The crystal structure of SleB N-terminal domain | ||||||
![]() | Spore cortex-lytic enzyme | ||||||
![]() | HYDROLASE / Spore cortex lytic enzyme / peptidoglycan binding domain | ||||||
Function / homology | ![]() intracellular immature spore / spore germination / sporulation resulting in formation of a cellular spore / cell wall organization / hydrolase activity Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Chirgadze, D.Y. / Hardwick, S.W. / Christie, G. | ||||||
![]() | ![]() Title: The crystal structure of SleB N-terminal domain Authors: Chirgadze, D.Y. / Hardwick, S.W. / Christie, G. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 48.9 KB | Display | ![]() |
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PDB format | ![]() | 28.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 409.7 KB | Display | ![]() |
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Full document | ![]() | 409.7 KB | Display | |
Data in XML | ![]() | 5.8 KB | Display | |
Data in CIF | ![]() | 7.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4lpqS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 8261.387 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.09 Å3/Da / Density % sol: 41.27 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop Details: 25% PEG 3350 containing 0.2 M potassium thiocyanate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: Jan 20, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9763 Å / Relative weight: 1 |
Reflection | Resolution: 1.47→30.64 Å / Num. obs: 12245 / % possible obs: 99.45 % / Redundancy: 8.8 % / Biso Wilson estimate: 16.69 Å2 / CC1/2: 0.886 / Rmerge(I) obs: 0.079 / Rpim(I) all: 0.099 / Rrim(I) all: 0.079 / Net I/σ(I): 17.4 |
Reflection shell | Resolution: 1.47→1.5 Å / Redundancy: 6.7 % / Rmerge(I) obs: 1.586 / Num. unique obs: 1128 / CC1/2: 0.637 / Rpim(I) all: 0.231 / Rrim(I) all: 0.16 / % possible all: 94.39 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4LPQ Resolution: 1.47→30.64 Å / SU ML: 0.1354 / Cross valid method: FREE R-VALUE / σ(F): 1.36 / Phase error: 19.1335
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 22.2 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.47→30.64 Å
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Refine LS restraints |
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LS refinement shell |
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