+Open data
-Basic information
Entry | Database: PDB / ID: 6mvz | ||||||
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Title | Mle-Phe-Mle-Phe. Linear precursor of pseudoxylallemycin A. | ||||||
Components | Linear precursor of pseudoxylallemycin A | ||||||
Keywords | ANTIBIOTIC / tetrapeptide / N-methyl leucine / linear precursor of pseudoxylallemycin A | ||||||
Function / homology | Linear precursor of pseudoxylallemycin A / trifluoroacetic acid Function and homology information | ||||||
Biological species | Xylaria (fungus) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / AB INITIO PHASING / Resolution: 0.83 Å | ||||||
Authors | Cameron, A.J. / Harris, P.W.R. / Brimble, M.A. / Squire, C.J. | ||||||
Citation | Journal: Org.Biomol.Chem. / Year: 2019 Title: Investigations of the key macrolactamisation step in the synthesis of cyclic tetrapeptide pseudoxylallemycin A. Authors: Cameron, A.J. / Squire, C.J. / Gerenton, A. / Stubbing, L.A. / Harris, P.W.R. / Brimble, M.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6mvz.cif.gz | 9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6mvz.ent.gz | 5.8 KB | Display | PDB format |
PDBx/mmJSON format | 6mvz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mv/6mvz ftp://data.pdbj.org/pub/pdb/validation_reports/mv/6mvz | HTTPS FTP |
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-Related structure data
Related structure data | 6mw0C 6mw1C 6mw2C C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein/peptide | Type: Peptide-like / Class: Antibiotic / Mass: 566.730 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: Mle-Phe-Mle-Phe. Linear precursor of pseudoxylallemycin A. The peptide is linear, unlike Mle-Phe-Mle-Phe Pseudoxylallemycin A that is cyclic. Source: (synth.) Xylaria (fungus) / References: Linear precursor of pseudoxylallemycin A |
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#2: Chemical | ChemComp-TFA / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 1.64 Å3/Da / Density % sol: 24.86 % |
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Crystal grow | Temperature: 293 K / Method: evaporation / Details: ethanol, water |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: SYNCHROTRON / Site: Australian Synchrotron / Beamline: MX2 / Wavelength: 0.71075 Å |
Detector | Type: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Jul 13, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.71075 Å / Relative weight: 1 |
Reflection | Resolution: 0.83→23.44 Å / Num. obs: 4332 / % possible obs: 98 % / Redundancy: 14.3 % / CC1/2: 0.989 / Rmerge(I) obs: 0.117 / Rpim(I) all: 0.033 / Net I/σ(I): 22.9 |
Reflection shell | Resolution: 0.83→0.85 Å / Redundancy: 11.9 % / Rmerge(I) obs: 0.127 / Mean I/σ(I) obs: 16.5 / Num. unique obs: 253 / CC1/2: 0.99 / Rpim(I) all: 0.038 / % possible all: 83.8 |
-Processing
Software |
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Refinement | Method to determine structure: AB INITIO PHASING / Resolution: 0.83→23.44 Å / Cross valid method: NONE Details: full least squares refinement using SHELXL, anisotropic atoms, riding hydrogens.
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Refinement step | Cycle: LAST / Resolution: 0.83→23.44 Å /
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