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Yorodumi- PDB-6lel: Structure of E. coli beta-glucuronidase complex with C6-hexyl uro... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6lel | ||||||
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Title | Structure of E. coli beta-glucuronidase complex with C6-hexyl uronic isofagomine | ||||||
Components | Beta-D-glucuronidase | ||||||
Keywords | HYDROLASE / inhibitor / glycosidase / isofagomine | ||||||
Function / homology | Function and homology information glucuronoside catabolic process / beta-glucuronidase / beta-glucuronidase activity / carbohydrate binding / carbohydrate metabolic process / signaling receptor binding / protein-containing complex / extracellular space / identical protein binding / cytosol Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.498 Å | ||||||
Authors | Lin, H.-Y. / Kuo, Y.-H. / Lin, C.-H. | ||||||
Funding support | Taiwan, 1items
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Citation | Journal: Commun Biol / Year: 2021 Title: Entropy-driven binding of gut bacterial beta-glucuronidase inhibitors ameliorates irinotecan-induced toxicity. Authors: Lin, H.Y. / Chen, C.Y. / Lin, T.C. / Yeh, L.F. / Hsieh, W.C. / Gao, S. / Burnouf, P.A. / Chen, B.M. / Hsieh, T.J. / Dashnyam, P. / Kuo, Y.H. / Tu, Z. / Roffler, S.R. / Lin, C.H. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6lel.cif.gz | 486.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6lel.ent.gz | 400.9 KB | Display | PDB format |
PDBx/mmJSON format | 6lel.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6lel_validation.pdf.gz | 889.2 KB | Display | wwPDB validaton report |
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Full document | 6lel_full_validation.pdf.gz | 965.3 KB | Display | |
Data in XML | 6lel_validation.xml.gz | 50.6 KB | Display | |
Data in CIF | 6lel_validation.cif.gz | 68.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/le/6lel ftp://data.pdbj.org/pub/pdb/validation_reports/le/6lel | HTTPS FTP |
-Related structure data
Related structure data | 6ld0C 6ld6C 6ldbC 6ldcC 6lddC 6legC 6lejC 6lemC 3k46S S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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