+Open data
-Basic information
Entry | Database: PDB / ID: 6j37 | ||||||||||||||||||||
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Title | DNA minidumbbell structure of two CTTG repeats | ||||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / minidumbbell / reverse wobble TT mispair / hydrophobic interaction | Function / homology | DNA | Function and homology information Biological species | Homo sapiens (human) | Method | SOLUTION NMR / not applicable | Authors | Lam, S.L. / Guo, P. | Citation | Journal: J.Biomol.Struct.Dyn. / Year: 2020 | Title: Unprecedented hydrophobic stabilizations from a reverse wobble T·T mispair in DNA minidumbbell. Authors: Guo, P. / Lam, S.L. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6j37.cif.gz | 91.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6j37.ent.gz | 63.4 KB | Display | PDB format |
PDBx/mmJSON format | 6j37.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6j37_validation.pdf.gz | 312.4 KB | Display | wwPDB validaton report |
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Full document | 6j37_full_validation.pdf.gz | 404 KB | Display | |
Data in XML | 6j37_validation.xml.gz | 5.4 KB | Display | |
Data in CIF | 6j37_validation.cif.gz | 8.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/j3/6j37 ftp://data.pdbj.org/pub/pdb/validation_reports/j3/6j37 | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 2408.589 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Homo sapiens (human) |
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#2: Chemical | ChemComp-NA / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 1 mM No labeling DNA, 10 mM No labeling sodium phosphate, 0.02 mM No labeling DSS, 99.96% D2O Label: No labeling / Solvent system: 99.96% D2O | ||||||||||||||||
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Sample |
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Sample conditions | Ionic strength: 10 mM / Ionic strength err: 0.1 / Label: condition_1 / pH: 7.0 / PH err: 0.1 / Pressure: 1 bar / Pressure err: 0.01 / Temperature: 273 K / Temperature err: 0.1 |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: not applicable / Software ordinal: 1 | |||||||||
NMR representative | Selection criteria: least restraint violation | |||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 1000 / Conformers submitted total number: 20 |