+Open data
-Basic information
Entry | Database: PDB / ID: 6iha | ||||||
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Title | antibacterial peptide SibaCec-A | ||||||
Components | SibaCec-A | ||||||
Keywords | ANTITOXIN / antibacterial peptide / alpha-helix | ||||||
Function / homology | Cecropin 4 Function and homology information | ||||||
Biological species | Simulium bannaense (insect) | ||||||
Method | SOLUTION NMR / DGSA-distance geometry simulated annealing | ||||||
Authors | Jing, H. / Lin, W. | ||||||
Citation | Journal: To Be Published Title: antibacterial peptide SibaCec-A Authors: Jing, H. / Lin, W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6iha.cif.gz | 183.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6iha.ent.gz | 153.2 KB | Display | PDB format |
PDBx/mmJSON format | 6iha.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6iha_validation.pdf.gz | 358 KB | Display | wwPDB validaton report |
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Full document | 6iha_full_validation.pdf.gz | 406.7 KB | Display | |
Data in XML | 6iha_validation.xml.gz | 11.5 KB | Display | |
Data in CIF | 6iha_validation.cif.gz | 18.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ih/6iha ftp://data.pdbj.org/pub/pdb/validation_reports/ih/6iha | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3114.813 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Simulium bannaense (insect) / References: UniProt: A0A0U2QEK1*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution / Contents: 3.0 mM peptide, trifluoroethanol/water / Label: sample / Solvent system: trifluoroethanol/water |
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Sample | Conc.: 3.0 mM / Component: peptide / Isotopic labeling: natural abundance |
Sample conditions | Ionic strength: 0 M / Label: TFE / pH: 7 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 850 MHz |
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-Processing
NMR software |
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Refinement | Method: DGSA-distance geometry simulated annealing / Software ordinal: 1 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20 |