- PDB-6hju: The X-ray structure of the horse spleen ferritin nanocage contain... -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 6hju
Title
The X-ray structure of the horse spleen ferritin nanocage containing Pt, obtained upon encapsulation of a Pt(II) terpyridine compound within the protein cage
Components
Ferritin light chain
Keywords
METAL TRANSPORT / metal-based compound encapsulation / ferritin nanocage / platinum based compound
Function / homology
Function and homology information
intracellular ferritin complex / intracellular sequestering of iron ion / ferric iron binding / ferrous iron binding / iron ion transport / iron ion binding / cytoplasm Similarity search - Function
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1.54 Å / Relative weight: 1
Reflection
Resolution: 1.58→90.3 Å / Num. obs: 33571 / % possible obs: 95.9 % / Redundancy: 44.2 % / Net I/σ(I): 15.7
Reflection shell
Resolution: 1.58→1.63 Å / Rpim(I) all: 0.569
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Processing
Software
Name
Version
Classification
REFMAC
5.8.0230
refinement
XDS
datareduction
XSCALE
datascaling
BUSTER
phasing
Refinement
Resolution: 1.58→90.3 Å / Cor.coef. Fo:Fc: 0.974 / Cor.coef. Fo:Fc free: 0.96 / SU B: 2.436 / SU ML: 0.038 / Cross valid method: THROUGHOUT / ESU R: 0.072 / ESU R Free: 0.07 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.18214
1647
4.9 %
RANDOM
Rwork
0.13164
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obs
0.1342
31853
95.56 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å