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- PDB-6gie: Crystal structure of the Acinetobacter baumannii outer membrane p... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6gie | ||||||
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Title | Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33 | ||||||
![]() | 33-36 kDa outer membrane protein | ||||||
![]() | MEMBRANE PROTEIN / channel | ||||||
Function / homology | Putative general bacterial porin / Putative general bacterial porin / Putative 34 kDa outer membrane protein / Carbapenem susceptibility porin CarO![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Abellon-Ruiz, J. / Zahn, M. / Basle, A. / van den Berg, B. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33. Authors: Abellon-Ruiz, J. / Zahn, M. / Basle, A. / van den Berg, B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 103.1 KB | Display | ![]() |
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PDB format | ![]() | 77.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 32337.406 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Gene: carO, ABUW_0187, B4R90_18580, CBI29_03686, CHQ89_12430, CV949_17495, CV951_18190, CV952_18425, CV954_00850 Production host: ![]() ![]() | ||
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#2: Chemical | ChemComp-C8E / ( #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.11 Å3/Da / Density % sol: 41.61 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / Details: 26% PEG 400 0.05M NaCl 0.1M sodium citrate pH5.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Oct 10, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97834 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→43.1 Å / Num. obs: 16543 / % possible obs: 100 % / Redundancy: 7.1 % / Rpim(I) all: 0.048 / Net I/σ(I): 9.5 |
Reflection shell | Resolution: 2.1→2.2 Å / CC1/2: 0.38 / Rpim(I) all: 0.63 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: previous SAD not deposited Resolution: 2.1→43.1 Å / Cor.coef. Fo:Fc: 0.929 / Cor.coef. Fo:Fc free: 0.892 / SU B: 11.173 / SU ML: 0.143 / Cross valid method: THROUGHOUT / ESU R: 0.271 / ESU R Free: 0.227 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.7 Å / Shrinkage radii: 0.7 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 34.928 Å2
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Refinement step | Cycle: 1 / Resolution: 2.1→43.1 Å
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Refine LS restraints |
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