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- PDB-6f43: Crystal structure of apo form of Glutathione transferase Omega 3S... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6f43 | |||||||||
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Title | Crystal structure of apo form of Glutathione transferase Omega 3S from Trametes versicolor | |||||||||
![]() | glutathione transferase | |||||||||
![]() | TRANSFERASE / Glutathione / fungi / polyphenols / wood decayers | |||||||||
Function / homology | ![]() glutathione dehydrogenase (ascorbate) activity / L-ascorbic acid metabolic process / glutathione transferase / glutathione transferase activity / glutathione metabolic process / metal ion binding / cytoplasm Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Schwartz, M. / Favier, F. / Didierjean, C. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Molecular recognition of wood polyphenols by phase II detoxification enzymes of the white rot Trametes versicolor. Authors: Schwartz, M. / Perrot, T. / Aubert, E. / Dumarcay, S. / Favier, F. / Gerardin, P. / Morel-Rouhier, M. / Mulliert, G. / Saiag, F. / Didierjean, C. / Gelhaye, E. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 302.9 KB | Display | ![]() |
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PDB format | ![]() | 249.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 456.5 KB | Display | ![]() |
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Full document | ![]() | 456.6 KB | Display | |
Data in XML | ![]() | 23.2 KB | Display | |
Data in CIF | ![]() | 35.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6f4bC ![]() 6f4fC ![]() 6f4kC ![]() 6f51C ![]() 6f66C ![]() 6f67C ![]() 6f68C ![]() 6f69C ![]() 6f6aC ![]() 6f70C ![]() 6f71C ![]() 6ht6C ![]() 4pqiS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
-Protein , 1 types, 2 molecules AB
#1: Protein | Mass: 27526.504 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() References: UniProt: A0A384E145*PLUS, glutathione transferase |
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-Non-polymers , 5 types, 488 molecules ![](data/chem/img/ACT.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/PEG.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/PEG.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | ChemComp-ACT / #3: Chemical | #4: Chemical | #5: Chemical | ChemComp-CA / | #6: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.58 Å3/Da / Density % sol: 52.34 % / Description: Bipyramidal crystals. |
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Crystal grow | Temperature: 278 K / Method: microbatch / pH: 4.5 Details: 30 % PEG 400, 0.2 M Calcium Acetate, 0.1 M Acetate Buffer, pH 4.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Feb 5, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.98 Å / Relative weight: 1 |
Reflection | Resolution: 1.35→47.88 Å / Num. obs: 125602 / % possible obs: 100 % / Redundancy: 8.2 % / Rsym value: 0.071 / Net I/σ(I): 16.5 |
Reflection shell | Resolution: 1.35→1.39 Å |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4PQI Resolution: 1.35→47.877 Å / SU ML: 0.12 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 14.84 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.35→47.877 Å
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Refine LS restraints |
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LS refinement shell |
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