+Open data
-Basic information
Entry | Database: PDB / ID: 6a5j | ||||||
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Title | solution NMR Structure of small peptide | ||||||
Components | ILE-LYS-LYS-ILE-LEU-SER-LYS-ILE-LYS-LYS-LEU-LEU-LYS | ||||||
Keywords | ANTIMICROBIAL PROTEIN / anticancer / antibiotic | ||||||
Biological species | Rana chensinensis (Chinese brown frog) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Feng, L.B. / Dong, W.B. | ||||||
Citation | Journal: To Be Published Title: The solution NMR Structure of antimicrobial peptide L-K6, the analog of temporin-1CEB derived from the skin secretions of Chinese brown frog Rana chensinenesis Authors: Feng, L.B. / Dong, W.B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6a5j.cif.gz | 87.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6a5j.ent.gz | 62.6 KB | Display | PDB format |
PDBx/mmJSON format | 6a5j.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6a5j_validation.pdf.gz | 426.3 KB | Display | wwPDB validaton report |
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Full document | 6a5j_full_validation.pdf.gz | 553.7 KB | Display | |
Data in XML | 6a5j_validation.xml.gz | 14.5 KB | Display | |
Data in CIF | 6a5j_validation.cif.gz | 16.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/a5/6a5j ftp://data.pdbj.org/pub/pdb/validation_reports/a5/6a5j | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1559.118 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Rana chensinensis (Chinese brown frog) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution / Contents: 3 mM LK6, 90% H2O/TFE(6:4 v/v), 10% D2O / Label: peptide_sample / Solvent system: 90% H2O/TFE(6:4 v/v), 10% D2O |
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Sample | Conc.: 3 mM / Component: LK6 / Isotopic labeling: natural abundance |
Sample conditions | Ionic strength: 0 mM / Label: c1 / pH: 4.5 / Pressure: ambient bar / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III HD / Manufacturer: Bruker / Model: AVANCE III HD / Field strength: 850 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 / Details: CNS/Aria2 | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: 20 / Conformers calculated total number: 100 / Conformers submitted total number: 20 |