- PDB-5ztz: Proteobacterial origin of protein arginine methylation and regula... -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 5ztz
Title
Proteobacterial origin of protein arginine methylation and regulation of Complex I assembly by MidA
Components
Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
Keywords
TRANSFERASE / Mitochondria Complex I / Methyl Transferase / MidA/NDUFAF7 / SAM / SAH / NDUFS2
Function / homology
Function and homology information
Complex I biogenesis / pinocytosis / phototaxis / culmination involved in sorocarp development / type II protein arginine methyltransferase / protein-arginine omega-N symmetric methyltransferase activity / glutamate metabolic process / thermotaxis / positive regulation of mitochondrial fission / glycogen metabolic process ...Complex I biogenesis / pinocytosis / phototaxis / culmination involved in sorocarp development / type II protein arginine methyltransferase / protein-arginine omega-N symmetric methyltransferase activity / glutamate metabolic process / thermotaxis / positive regulation of mitochondrial fission / glycogen metabolic process / sporulation resulting in formation of a cellular spore / mitochondrial respiratory chain complex I assembly / phagocytosis / ATP metabolic process / negative regulation of autophagy / methylation / mitochondrion Similarity search - Function
Resolution: 2.8→100.53 Å / Num. obs: 37830 / % possible obs: 96.81 % / Redundancy: 10.8 % / Rsym value: 0.17 / Net I/σ(I): 6.98
Reflection shell
Resolution: 2.8→2.9 Å / Num. unique obs: 3505
-
Processing
Software
Name
Version
Classification
REFMAC
5.8.0216
refinement
HKL-2000
datareduction
HKL-2000
datascaling
PHENIX
phasing
Refinement
Method to determine structure: MAD / Resolution: 2.8→100.53 Å / Cor.coef. Fo:Fc: 0.914 / Cor.coef. Fo:Fc free: 0.899 / SU B: 30.679 / SU ML: 0.261 / Cross valid method: THROUGHOUT / ESU R Free: 0.351 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.23515
2000
5.3 %
RANDOM
Rwork
0.21462
-
-
-
obs
0.21572
35834
96.79 %
-
Solvent computation
Ion probe radii: 0.7 Å / Shrinkage radii: 0.7 Å / VDW probe radii: 1 Å / Solvent model: MASK