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- PDB-5zj3: Textilinin-1, A Kunitz-Type Serine Protease Inhibitor From pichia... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5zj3 | ||||||
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Title | Textilinin-1, A Kunitz-Type Serine Protease Inhibitor From pichia expression system | ||||||
![]() | Kunitz-type serine protease inhibitor textilinin-1 | ||||||
![]() | HYDROLASE INHIBITOR / Textilinin-1 / A Kunitz-Type Serine Protease Inhibitor From | ||||||
Function / homology | ![]() suppression of blood coagulation in another organism / serine-type endopeptidase inhibitor activity / toxin activity / extracellular region Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Ou, X.J. / li, N. | ||||||
![]() | ![]() Title: Textilinin-1, A Kunitz-Type Serine Protease Inhibitor expressed from picha system by LIAONING GRAND NUOKANG BIOPHARMACEUTICAL CO.,LTD Authors: Ou, X.J. / Li, N. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 47.7 KB | Display | ![]() |
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PDB format | ![]() | 37.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 433.5 KB | Display | ![]() |
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Full document | ![]() | 434.2 KB | Display | |
Data in XML | ![]() | 10.9 KB | Display | |
Data in CIF | ![]() | 16.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 6698.442 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.43 Å3/Da / Density % sol: 49.44 % |
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Crystal grow | Temperature: 290 K / Method: vapor diffusion, hanging drop Details: 0.1M Na HEPES, 2%(v/v) PEG 400, Mammonium sulfate, pH 7.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RAYONIX SX-165mm / Detector: CCD / Date: Mar 1, 2017 |
Radiation | Monochromator: double mirrors / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.88→50 Å / Num. obs: 16431 / % possible obs: 100 % / Redundancy: 14 % / Net I/σ(I): 6.4 |
Reflection shell | Resolution: 1.88→1.91 Å / Num. unique obs: 808 / % possible all: 100 |
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Processing
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Refinement | Resolution: 1.88→38.686 Å / SU ML: 0.22 / Cross valid method: FREE R-VALUE / σ(F): 1.38 / Phase error: 20.57
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Solvent computation | Shrinkage radii: 0.72 Å / VDW probe radii: 1 Å / Bsol: 40.24 Å2 / ksol: 0.397 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters |
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Refinement step | Cycle: LAST / Resolution: 1.88→38.686 Å
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Refine LS restraints |
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LS refinement shell |
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