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Yorodumi- PDB-5wxe: Highly disulfide-constrained antifeedant jasmintides from Jasminu... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5wxe | ||||||
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Title | Highly disulfide-constrained antifeedant jasmintides from Jasminum sambac flowers | ||||||
Components | jasmintide js3 | ||||||
Keywords | UNKNOWN FUNCTION / jasmintide / disulfide-constrained antifeedant / Jasminum sambac | ||||||
Function / homology | Jasmintide js3 Function and homology information | ||||||
Biological species | Jasminum sambac (Arabian jasmine) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Kumari, G. / Wong, K.H. / Serra, A. / Shin, J. / Yoon, H.S. / Sze, S.K. / James, P.T. | ||||||
Citation | Journal: To Be Published Title: Highly disulfide-constrained antifeedant jasmintides from Jasminum sambac flowers Authors: Kumari, G. / Wong, K.H. / Serra, A. / Shin, J. / Yoon, H.S. / Sze, S.K. / James, P.T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5wxe.cif.gz | 167.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5wxe.ent.gz | 139.3 KB | Display | PDB format |
PDBx/mmJSON format | 5wxe.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5wxe_validation.pdf.gz | 452.1 KB | Display | wwPDB validaton report |
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Full document | 5wxe_full_validation.pdf.gz | 593.9 KB | Display | |
Data in XML | 5wxe_validation.xml.gz | 17.9 KB | Display | |
Data in CIF | 5wxe_validation.cif.gz | 24.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/wx/5wxe ftp://data.pdbj.org/pub/pdb/validation_reports/wx/5wxe | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3226.774 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Jasminum sambac (Arabian jasmine) / Production host: Jasminum sambac (Arabian jasmine) / References: UniProt: A0A2R2JFU3*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 50 mM / Label: conditions_1 / pH: 7 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 700 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 5 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20 |