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Open data
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Basic information
Entry | Database: PDB / ID: 5u9x | ||||||
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Title | Ocellatin-LB2 | ||||||
![]() | Ocellatin-K1 | ||||||
![]() | ANTIMICROBIAL PROTEIN / OCELLATIN / ANTIMICROBIAL PEPTIDE / ALPHA HELIX / AMPHIPATHIC CHARACTER / C-TERMINAL CARBOXYAMIDATION | ||||||
Function / homology | Ocellatin / Ocellatin family / hemolysis by symbiont of host erythrocytes / hemolysis in another organism / defense response to bacterium / extracellular region / Ocellatin-K1![]() | ||||||
Biological species | Leptodactylus knudseni (Knudsen's thin-toed frog) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
![]() | Gusmao, K.A.G. / dos Santos, D.M. / Santos, V.M. / Pilo-Veloso, D. / de Lima, M.E. / Resende, J.M. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Ocellatin-LB2 Authors: Gusmao, K.A.G. / dos Santos, D.M. / Santos, V.M. / Pilo-Veloso, D. / de Lima, M.E. / Resende, J.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 63.5 KB | Display | ![]() |
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PDB format | ![]() | 49.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 368.5 KB | Display | ![]() |
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Full document | ![]() | 420.3 KB | Display | |
Data in XML | ![]() | 6.7 KB | Display | |
Data in CIF | ![]() | 9.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 2309.751 Da / Num. of mol.: 1 / Source method: obtained synthetically Source: (synth.) Leptodactylus knudseni (Knudsen's thin-toed frog) References: UniProt: P86711 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: solution Contents: 2.0 mM Ocellatin-LB2, 100 mM d-38 DPC, 5 % 99.75% D2O, 95% H2O/5% D2O Label: Ocellatin-LB2-DPC / Solvent system: 95% H2O/5% D2O | ||||||||||||||||
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Sample |
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Sample conditions | Ionic strength: Null / Label: Ocellatin-LB2 / pH: 4 / Pressure: Ambient / Temperature: 293.15 K |
-NMR measurement
NMR spectrometer | Type: Bruker AvanceIII / Manufacturer: Bruker / Model: AvanceIII / Field strength: 800 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 8 | ||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |