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- PDB-5tvh: Crystal structure of AChBP from Aplysia californica complex with ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5tvh | ||||||
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Title | Crystal structure of AChBP from Aplysia californica complex with 2-aminopyrimidine at pH 8.0 spacegroup P21 | ||||||
![]() | Soluble acetylcholine receptor | ||||||
![]() | METAL BINDING PROTEIN / AChBP / 2-aminopyrimidine | ||||||
Function / homology | ![]() acetylcholine receptor activity / acetylcholine-gated monoatomic cation-selective channel activity / response to nicotine / neuron projection / synapse / identical protein binding / membrane / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Camacho-Hernandez, G.A. / Kaczanowska, K. / Harel, M. / Finn, M.G. / Taylor, P.W. | ||||||
![]() | ![]() Title: Crystal structure of AChBP from Aplysia californica complex with 2-aminopyrimidine at pH 7.0 spacegroup P212121 Authors: Camacho-Hernandez, G.A. / Kaczanowska, K. / Harel, M. / Finn, M.G. / Taylor, P.W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 227.4 KB | Display | ![]() |
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PDB format | ![]() | 181.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 2 MB | Display | ![]() |
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Full document | ![]() | 2 MB | Display | |
Data in XML | ![]() | 40.5 KB | Display | |
Data in CIF | ![]() | 54.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5tsfC ![]() 2byrS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 26212.105 Da / Num. of mol.: 5 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Cell line (production host): hek293s Gnt1 / Production host: ![]() #2: Chemical | ChemComp-7KO / #3: Chemical | ChemComp-DMS / #4: Sugar | ChemComp-NAG / | #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.61 Å3/Da / Density % sol: 52.85 % |
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Crystal grow | Temperature: 281 K / Method: vapor diffusion, hanging drop / pH: 8 / Details: 20% PEG 4000, 0.1M Tris pH 8.0, 0.2M NaCl |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Sep 17, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.4→88.1 Å / Num. obs: 50190 / % possible obs: 95.1 % / Redundancy: 7.4 % / CC1/2: 0.924 / Rmerge(I) obs: 0.457 / Rpim(I) all: 0.178 / Net I/σ(I): 16.2 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2BYR.pdb Resolution: 2.4→50.468 Å / SU ML: 0.31 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 25.82
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.4→50.468 Å
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Refine LS restraints |
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LS refinement shell |
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