- PDB-5tr7: Crystal structure of a putative D-alanyl-D-alanine carboxypeptida... -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 5tr7
Title
Crystal structure of a putative D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae O1 biovar eltor str. N16961
Components
D-alanyl-D-alanine carboxypeptidase
Keywords
PENICILLIN-BINDING PROTEIN / PBP5 / penicil-binding protein / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID / TRANSFERASE
Function / homology
Function and homology information
serine-type D-Ala-D-Ala carboxypeptidase / serine-type D-Ala-D-Ala carboxypeptidase activity / peptidoglycan biosynthetic process / cell wall organization / regulation of cell shape Similarity search - Function
Resolution: 2.05→30 Å / Cor.coef. Fo:Fc: 0.97 / Cor.coef. Fo:Fc free: 0.951 / SU B: 17.21 / SU ML: 0.198 / Cross valid method: THROUGHOUT / ESU R: 0.209 / ESU R Free: 0.18 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.23774
2246
4.8 %
RANDOM
Rwork
0.19086
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obs
0.19321
44920
99.94 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å