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- PDB-5tbf: Crystal structure of SeMet derivatives of domain2 and domain 3 of RctB -
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Open data
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Basic information
Entry | Database: PDB / ID: 5tbf | ||||||
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Title | Crystal structure of SeMet derivatives of domain2 and domain 3 of RctB | ||||||
![]() | Translation elongation factor | ||||||
![]() | TRANSLATION / RctB | ||||||
Function / homology | Replication initiator protein RctB, central region / RctB, helix turn helix domain / Vibrionales, replication initiator protein RctB, central region / RctB helix turn helix domain / translation elongation factor activity / Translation elongation factor / Uncharacterized protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Li, M. / Wlodawer, A. / Chattoraj, D. / Jha, J. | ||||||
![]() | ![]() Title: Crystal Structure of core domains of RctB Authors: Li, M. / Wlodawer, A. / Jha, J. / Chattoraj, D. / Gustchina, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 120.4 KB | Display | ![]() |
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PDB format | ![]() | 99.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 429.8 KB | Display | ![]() |
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Full document | ![]() | 437.6 KB | Display | |
Data in XML | ![]() | 21.1 KB | Display | |
Data in CIF | ![]() | 27.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 38469.270 Da / Num. of mol.: 2 / Fragment: residues 145-470 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.91 Å3/Da / Density % sol: 57.73 % |
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Crystal grow | Method: vapor diffusion, hanging drop / pH: 4.5 / Details: 1.5M Ammonium Sulfate |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX300-HS / Detector: CCD / Date: Aug 19, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9786 Å / Relative weight: 1 |
Reflection | Resolution: 3→55 Å / Num. obs: 18054 / % possible obs: 99.1 % / Redundancy: 6.7 % / Net I/σ(I): 19.68 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.003→43.37 Å
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Refine LS restraints |
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LS refinement shell |
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