+Open data
-Basic information
Entry | Database: PDB / ID: 5o2m | ||||||
---|---|---|---|---|---|---|---|
Title | p130Cas SH3 domain | ||||||
Components | Breast cancer anti-estrogen resistance 1 | ||||||
Keywords | STRUCTURE FROM CYANA 3.97 / SH3 domain / p130Cas | ||||||
Function / homology | Function and homology information antigen receptor-mediated signaling pathway / endothelin receptor signaling pathway / hepatocyte growth factor receptor signaling pathway / cellular response to hepatocyte growth factor stimulus / p130Cas linkage to MAPK signaling for integrins / neurotrophin TRK receptor signaling pathway / platelet-derived growth factor receptor signaling pathway / vascular endothelial growth factor receptor signaling pathway / PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases / ruffle ...antigen receptor-mediated signaling pathway / endothelin receptor signaling pathway / hepatocyte growth factor receptor signaling pathway / cellular response to hepatocyte growth factor stimulus / p130Cas linkage to MAPK signaling for integrins / neurotrophin TRK receptor signaling pathway / platelet-derived growth factor receptor signaling pathway / vascular endothelial growth factor receptor signaling pathway / PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases / ruffle / cell chemotaxis / Downstream signal transduction / positive regulation of endothelial cell migration / actin filament organization / integrin-mediated signaling pathway / regulation of cell growth / B cell receptor signaling pathway / epidermal growth factor receptor signaling pathway / SH3 domain binding / VEGFA-VEGFR2 Pathway / cell surface receptor protein tyrosine kinase signaling pathway / cell migration / actin cytoskeleton / insulin receptor signaling pathway / lamellipodium / T cell receptor signaling pathway / regulation of apoptotic process / cell adhesion / positive regulation of cell migration / G protein-coupled receptor signaling pathway / axon / cell division / focal adhesion / protein kinase binding / membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Hexnerova, R. / Veverka, V. | ||||||
Citation | Journal: Sci Rep / Year: 2017 Title: Structural characterization of CAS SH3 domain selectivity and regulation reveals new CAS interaction partners. Authors: Gemperle, J. / Hexnerova, R. / Lepsik, M. / Tesina, P. / Dibus, M. / Novotny, M. / Brabek, J. / Veverka, V. / Rosel, D. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 5o2m.cif.gz | 994.9 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb5o2m.ent.gz | 839.7 KB | Display | PDB format |
PDBx/mmJSON format | 5o2m.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/o2/5o2m ftp://data.pdbj.org/pub/pdb/validation_reports/o2/5o2m | HTTPS FTP |
---|
-Related structure data
Related structure data | 5o2pC 5o2qC C: citing same article (ref.) |
---|---|
Similar structure data | |
Other databases |
|
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-Components
#1: Protein | Mass: 9053.410 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: BCAR1 / Production host: Escherichia coli (E. coli) / References: UniProt: Q6P5Z4, UniProt: P56945*PLUS |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-Sample preparation
Details | Type: solution / Contents: 25 mM sodium phosphate, 1 M TCEP, 90% H2O/10% D2O / Label: 1 / Solvent system: 90% H2O/10% D2O | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample |
| ||||||||||||
Sample conditions | Ionic strength: 100 mM / Label: 1 / pH: 7.5 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
|
---|
-Processing
NMR software |
| ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: simulated annealing / Software ordinal: 5 | ||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 40 |