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- PDB-5lox: Helical Assembly of the Anbu Complex from Pseudomonas aeruginosa -

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Basic information

Entry
Database: PDB / ID: 5lox
TitleHelical Assembly of the Anbu Complex from Pseudomonas aeruginosa
ComponentsPeptidase
KeywordsHYDROLASE / Protein Degradation / Ancestral Beta Subunit / Proteasome Precursor
Function / homologyUncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 / proteasome core complex / Proteasome subunit / Proteasome, subunit alpha/beta / Nucleophile aminohydrolases, N-terminal / proteolysis involved in protein catabolic process / Peptidase
Function and homology information
Biological speciesPseudomonas aeruginosa (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 2.9 Å
AuthorsFuchs, A.C.D. / Albrecht, R. / Martin, J. / Hartmann, M.D.
CitationJournal: Structure / Year: 2017
Title: The Architecture of the Anbu Complex Reflects an Evolutionary Intermediate at the Origin of the Proteasome System.
Authors: Fuchs, A.C.D. / Alva, V. / Maldoner, L. / Albrecht, R. / Hartmann, M.D. / Martin, J.
History
DepositionAug 10, 2016Deposition site: PDBE / Processing site: PDBE
Revision 1.0Jun 7, 2017Provider: repository / Type: Initial release
Revision 1.1Jun 14, 2017Group: Database references / Category: citation
Item: _citation.country / _citation.journal_id_ASTM ..._citation.country / _citation.journal_id_ASTM / _citation.journal_id_CSD / _citation.journal_volume / _citation.page_first / _citation.page_last
Revision 1.2Nov 13, 2024Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / pdbx_modification_feature / struct_ncs_dom_lim
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Peptidase
B: Peptidase
C: Peptidase
D: Peptidase
E: Peptidase
F: Peptidase
G: Peptidase
H: Peptidase
I: Peptidase
J: Peptidase
K: Peptidase
L: Peptidase
M: Peptidase
N: Peptidase
O: Peptidase
P: Peptidase
Q: Peptidase
R: Peptidase
S: Peptidase
T: Peptidase
U: Peptidase
V: Peptidase
W: Peptidase
X: Peptidase
Y: Peptidase
Z: Peptidase
1: Peptidase
2: Peptidase
3: Peptidase
4: Peptidase
5: Peptidase
6: Peptidase
7: Peptidase
8: Peptidase


Theoretical massNumber of molelcules
Total (without water)906,01034
Polymers906,01034
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author&software
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area138610 Å2
ΔGint-664 kcal/mol
Surface area292570 Å2
MethodPISA
Unit cell
Length a, b, c (Å)150.070, 230.080, 171.720
Angle α, β, γ (deg.)90.00, 108.39, 90.00
Int Tables number4
Space group name H-MP1211
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11A
21B
12A
22C
13A
23D
14A
24E
15A
25F
16A
26G
17A
27H
18A
28I
19A
29J
110A
210K
111A
211L
112A
212M
113A
213N
114A
214O
115A
215P
116A
216Q
117A
217R
118A
218S
119A
219T
120A
220U
121A
221V
122A
222W
123A
223X
124A
224Y
125A
225Z
126A
2261
127A
2272
128A
2283
129A
2294
130A
2305
131A
2316
132A
2327
133A
2338
134B
234C
135B
235D
136B
236E
137B
237F
138B
238G
139B
239H
140B
240I
141B
241J
142B
242K
143B
243L
144B
244M
145B
245N
146B
246O
147B
247P
148B
248Q
149B
249R
150B
250S
151B
251T
152B
252U
153B
253V
154B
254W
155B
255X
156B
256Y
157B
257Z
158B
2581
159B
2592
160B
2603
161B
2614
162B
2625
163B
2636
164B
2647
165B
2658
166C
266D
167C
267E
168C
268F
169C
269G
170C
270H
171C
271I
172C
272J
173C
273K
174C
274L
175C
275M
176C
276N
177C
277O
178C
278P
179C
279Q
180C
280R
181C
281S
182C
282T
183C
283U
184C
284V
185C
285W
186C
286X
187C
287Y
188C
288Z
189C
2891
190C
2902
191C
2913
192C
2924
193C
2935
194C
2946
195C
2957
196C
2968
197D
297E
198D
298F
199D
299G
1100D
2100H
1101D
2101I
1102D
2102J
1103D
2103K
1104D
2104L
1105D
2105M
1106D
2106N
1107D
2107O
1108D
2108P
1109D
2109Q
1110D
2110R
1111D
2111S
1112D
2112T
1113D
2113U
1114D
2114V
1115D
2115W
1116D
2116X
1117D
2117Y
1118D
2118Z
1119D
21191
1120D
21202
1121D
21213
1122D
21224
1123D
21235
1124D
21246
1125D
21257
1126D
21268
1127E
2127F
1128E
2128G
1129E
2129H
1130E
2130I
1131E
2131J
1132E
2132K
1133E
2133L
1134E
2134M
1135E
2135N
1136E
2136O
1137E
2137P
1138E
2138Q
1139E
2139R
1140E
2140S
1141E
2141T
1142E
2142U
1143E
2143V
1144E
2144W
1145E
2145X
1146E
2146Y
1147E
2147Z
1148E
21481
1149E
21492
1150E
21503
1151E
21514
1152E
21525
1153E
21536
1154E
21547
1155E
21558
1156F
2156G
1157F
2157H
1158F
2158I
1159F
2159J
1160F
2160K
1161F
2161L
1162F
2162M
1163F
2163N
1164F
2164O
1165F
2165P
1166F
2166Q
1167F
2167R
1168F
2168S
1169F
2169T
1170F
2170U
1171F
2171V
1172F
2172W
1173F
2173X
1174F
2174Y
1175F
2175Z
1176F
21761
1177F
21772
1178F
21783
1179F
21794
1180F
21805
1181F
21816
1182F
21827
1183F
21838
1184G
2184H
1185G
2185I
1186G
2186J
1187G
2187K
1188G
2188L
1189G
2189M
1190G
2190N
1191G
2191O
1192G
2192P
1193G
2193Q
1194G
2194R
1195G
2195S
1196G
2196T
1197G
2197U
1198G
2198V
1199G
2199W
1200G
2200X
1201G
2201Y
1202G
2202Z
1203G
22031
1204G
22042
1205G
22053
1206G
22064
1207G
22075
1208G
22086
1209G
22097
1210G
22108
1211H
2211I
1212H
2212J
1213H
2213K
1214H
2214L
1215H
2215M
1216H
2216N
1217H
2217O
1218H
2218P
1219H
2219Q
1220H
2220R
1221H
2221S
1222H
2222T
1223H
2223U
1224H
2224V
1225H
2225W
1226H
2226X
1227H
2227Y
1228H
2228Z
1229H
22291
1230H
22302
1231H
22313
1232H
22324
1233H
22335
1234H
22346
1235H
22357
1236H
22368
1237I
2237J
1238I
2238K
1239I
2239L
1240I
2240M
1241I
2241N
1242I
2242O
1243I
2243P
1244I
2244Q
1245I
2245R
1246I
2246S
1247I
2247T
1248I
2248U
1249I
2249V
1250I
2250W
1251I
2251X
1252I
2252Y
1253I
2253Z
1254I
22541
1255I
22552
1256I
22563
1257I
22574
1258I
22585
1259I
22596
1260I
22607
1261I
22618
1262J
2262K
1263J
2263L
1264J
2264M
1265J
2265N
1266J
2266O
1267J
2267P
1268J
2268Q
1269J
2269R
1270J
2270S
1271J
2271T
1272J
2272U
1273J
2273V
1274J
2274W
1275J
2275X
1276J
2276Y
1277J
2277Z
1278J
22781
1279J
22792
1280J
22803
1281J
22814
1282J
22825
1283J
22836
1284J
22847
1285J
22858
1286K
2286L
1287K
2287M
1288K
2288N
1289K
2289O
1290K
2290P
1291K
2291Q
1292K
2292R
1293K
2293S
1294K
2294T
1295K
2295U
1296K
2296V
1297K
2297W
1298K
2298X
1299K
2299Y
1300K
2300Z
1301K
23011
1302K
23022
1303K
23033
1304K
23044
1305K
23055
1306K
23066
1307K
23077
1308K
23088
1309L
2309M
1310L
2310N
1311L
2311O
1312L
2312P
1313L
2313Q
1314L
2314R
1315L
2315S
1316L
2316T
1317L
2317U
1318L
2318V
1319L
2319W
1320L
2320X
1321L
2321Y
1322L
2322Z
1323L
23231
1324L
23242
1325L
23253
1326L
23264
1327L
23275
1328L
23286
1329L
23297
1330L
23308
1331M
2331N
1332M
2332O
1333M
2333P
1334M
2334Q
1335M
2335R
1336M
2336S
1337M
2337T
1338M
2338U
1339M
2339V
1340M
2340W
1341M
2341X
1342M
2342Y
1343M
2343Z
1344M
23441
1345M
23452
1346M
23463
1347M
23474
1348M
23485
1349M
23496
1350M
23507
1351M
23518
1352N
2352O
1353N
2353P
1354N
2354Q
1355N
2355R
1356N
2356S
1357N
2357T
1358N
2358U
1359N
2359V
1360N
2360W
1361N
2361X
1362N
2362Y
1363N
2363Z
1364N
23641
1365N
23652
1366N
23663
1367N
23674
1368N
23685
1369N
23696
1370N
23707
1371N
23718
1372O
2372P
1373O
2373Q
1374O
2374R
1375O
2375S
1376O
2376T
1377O
2377U
1378O
2378V
1379O
2379W
1380O
2380X
1381O
2381Y
1382O
2382Z
1383O
23831
1384O
23842
1385O
23853
1386O
23864
1387O
23875
1388O
23886
1389O
23897
1390O
23908
1391P
2391Q
1392P
2392R
1393P
2393S
1394P
2394T
1395P
2395U
1396P
2396V
1397P
2397W
1398P
2398X
1399P
2399Y
1400P
2400Z
1401P
24011
1402P
24022
1403P
24033
1404P
24044
1405P
24055
1406P
24066
1407P
24077
1408P
24088
1409Q
2409R
1410Q
2410S
1411Q
2411T
1412Q
2412U
1413Q
2413V
1414Q
2414W
1415Q
2415X
1416Q
2416Y
1417Q
2417Z
1418Q
24181
1419Q
24192
1420Q
24203
1421Q
24214
1422Q
24225
1423Q
24236
1424Q
24247
1425Q
24258
1426R
2426S
1427R
2427T
1428R
2428U
1429R
2429V
1430R
2430W
1431R
2431X
1432R
2432Y
1433R
2433Z
1434R
24341
1435R
24352
1436R
24363
1437R
24374
1438R
24385
1439R
24396
1440R
24407
1441R
24418
1442S
2442T
1443S
2443U
1444S
2444V
1445S
2445W
1446S
2446X
1447S
2447Y
1448S
2448Z
1449S
24491
1450S
24502
1451S
24513
1452S
24524
1453S
24535
1454S
24546
1455S
24557
1456S
24568
1457T
2457U
1458T
2458V
1459T
2459W
1460T
2460X
1461T
2461Y
1462T
2462Z
1463T
24631
1464T
24642
1465T
24653
1466T
24664
1467T
24675
1468T
24686
1469T
24697
1470T
24708
1471U
2471V
1472U
2472W
1473U
2473X
1474U
2474Y
1475U
2475Z
1476U
24761
1477U
24772
1478U
24783
1479U
24794
1480U
24805
1481U
24816
1482U
24827
1483U
24838
1484V
2484W
1485V
2485X
1486V
2486Y
1487V
2487Z
1488V
24881
1489V
24892
1490V
24903
1491V
24914
1492V
24925
1493V
24936
1494V
24947
1495V
24958
1496W
2496X
1497W
2497Y
1498W
2498Z
1499W
24991
1500W
25002
1501W
25013
1502W
25024
1503W
25035
1504W
25046
1505W
25057
1506W
25068
1507X
2507Y
1508X
2508Z
1509X
25091
1510X
25102
1511X
25113
1512X
25124
1513X
25135
1514X
25146
1515X
25157
1516X
25168
1517Y
2517Z
1518Y
25181
1519Y
25192
1520Y
25203
1521Y
25214
1522Y
25225
1523Y
25236
1524Y
25247
1525Y
25258
1526Z
25261
1527Z
25272
1528Z
25283
1529Z
25294
1530Z
25305
1531Z
25316
1532Z
25327
1533Z
25338
15341
25342
15351
25353
15361
25364
15371
25375
15381
25386
15391
25397
15401
25408
15412
25413
15422
25424
15432
25435
15442
25446
15452
25457
15462
25468
15473
25474
15483
25485
15493
25496
15503
25507
15513
25518
15524
25525
15534
25536
15544
25547
15554
25558
15565
25566
15575
25577
15585
25588
15596
25597
15606
25608
15617
25618

NCS domain segments:

Component-ID: _ / Beg auth comp-ID: THR / Beg label comp-ID: THR / End auth comp-ID: ASN / End label comp-ID: ASN / Refine code: _ / Auth seq-ID: 1 - 241 / Label seq-ID: 1 - 241

Dom-IDEns-IDAuth asym-IDLabel asym-ID
11AA
21BB
12AA
22CC
13AA
23DD
14AA
24EE
15AA
25FF
16AA
26GG
17AA
27HH
18AA
28II
19AA
29JJ
110AA
210KK
111AA
211LL
112AA
212MM
113AA
213NN
114AA
214OO
115AA
215PP
116AA
216QQ
117AA
217RR
118AA
218SS
119AA
219TT
120AA
220UU
121AA
221VV
122AA
222WW
123AA
223XX
124AA
224YY
125AA
225ZZ
126AA
2261AA
127AA
2272BA
128AA
2283CA
129AA
2294DA
130AA
2305EA
131AA
2316FA
132AA
2327GA
133AA
2338HA
134BB
234CC
135BB
235DD
136BB
236EE
137BB
237FF
138BB
238GG
139BB
239HH
140BB
240II
141BB
241JJ
142BB
242KK
143BB
243LL
144BB
244MM
145BB
245NN
146BB
246OO
147BB
247PP
148BB
248QQ
149BB
249RR
150BB
250SS
151BB
251TT
152BB
252UU
153BB
253VV
154BB
254WW
155BB
255XX
156BB
256YY
157BB
257ZZ
158BB
2581AA
159BB
2592BA
160BB
2603CA
161BB
2614DA
162BB
2625EA
163BB
2636FA
164BB
2647GA
165BB
2658HA
166CC
266DD
167CC
267EE
168CC
268FF
169CC
269GG
170CC
270HH
171CC
271II
172CC
272JJ
173CC
273KK
174CC
274LL
175CC
275MM
176CC
276NN
177CC
277OO
178CC
278PP
179CC
279QQ
180CC
280RR
181CC
281SS
182CC
282TT
183CC
283UU
184CC
284VV
185CC
285WW
186CC
286XX
187CC
287YY
188CC
288ZZ
189CC
2891AA
190CC
2902BA
191CC
2913CA
192CC
2924DA
193CC
2935EA
194CC
2946FA
195CC
2957GA
196CC
2968HA
197DD
297EE
198DD
298FF
199DD
299GG
1100DD
2100HH
1101DD
2101II
1102DD
2102JJ
1103DD
2103KK
1104DD
2104LL
1105DD
2105MM
1106DD
2106NN
1107DD
2107OO
1108DD
2108PP
1109DD
2109QQ
1110DD
2110RR
1111DD
2111SS
1112DD
2112TT
1113DD
2113UU
1114DD
2114VV
1115DD
2115WW
1116DD
2116XX
1117DD
2117YY
1118DD
2118ZZ
1119DD
21191AA
1120DD
21202BA
1121DD
21213CA
1122DD
21224DA
1123DD
21235EA
1124DD
21246FA
1125DD
21257GA
1126DD
21268HA
1127EE
2127FF
1128EE
2128GG
1129EE
2129HH
1130EE
2130II
1131EE
2131JJ
1132EE
2132KK
1133EE
2133LL
1134EE
2134MM
1135EE
2135NN
1136EE
2136OO
1137EE
2137PP
1138EE
2138QQ
1139EE
2139RR
1140EE
2140SS
1141EE
2141TT
1142EE
2142UU
1143EE
2143VV
1144EE
2144WW
1145EE
2145XX
1146EE
2146YY
1147EE
2147ZZ
1148EE
21481AA
1149EE
21492BA
1150EE
21503CA
1151EE
21514DA
1152EE
21525EA
1153EE
21536FA
1154EE
21547GA
1155EE
21558HA
1156FF
2156GG
1157FF
2157HH
1158FF
2158II
1159FF
2159JJ
1160FF
2160KK
1161FF
2161LL
1162FF
2162MM
1163FF
2163NN
1164FF
2164OO
1165FF
2165PP
1166FF
2166QQ
1167FF
2167RR
1168FF
2168SS
1169FF
2169TT
1170FF
2170UU
1171FF
2171VV
1172FF
2172WW
1173FF
2173XX
1174FF
2174YY
1175FF
2175ZZ
1176FF
21761AA
1177FF
21772BA
1178FF
21783CA
1179FF
21794DA
1180FF
21805EA
1181FF
21816FA
1182FF
21827GA
1183FF
21838HA
1184GG
2184HH
1185GG
2185II
1186GG
2186JJ
1187GG
2187KK
1188GG
2188LL
1189GG
2189MM
1190GG
2190NN
1191GG
2191OO
1192GG
2192PP
1193GG
2193QQ
1194GG
2194RR
1195GG
2195SS
1196GG
2196TT
1197GG
2197UU
1198GG
2198VV
1199GG
2199WW
1200GG
2200XX
1201GG
2201YY
1202GG
2202ZZ
1203GG
22031AA
1204GG
22042BA
1205GG
22053CA
1206GG
22064DA
1207GG
22075EA
1208GG
22086FA
1209GG
22097GA
1210GG
22108HA
1211HH
2211II
1212HH
2212JJ
1213HH
2213KK
1214HH
2214LL
1215HH
2215MM
1216HH
2216NN
1217HH
2217OO
1218HH
2218PP
1219HH
2219QQ
1220HH
2220RR
1221HH
2221SS
1222HH
2222TT
1223HH
2223UU
1224HH
2224VV
1225HH
2225WW
1226HH
2226XX
1227HH
2227YY
1228HH
2228ZZ
1229HH
22291AA
1230HH
22302BA
1231HH
22313CA
1232HH
22324DA
1233HH
22335EA
1234HH
22346FA
1235HH
22357GA
1236HH
22368HA
1237II
2237JJ
1238II
2238KK
1239II
2239LL
1240II
2240MM
1241II
2241NN
1242II
2242OO
1243II
2243PP
1244II
2244QQ
1245II
2245RR
1246II
2246SS
1247II
2247TT
1248II
2248UU
1249II
2249VV
1250II
2250WW
1251II
2251XX
1252II
2252YY
1253II
2253ZZ
1254II
22541AA
1255II
22552BA
1256II
22563CA
1257II
22574DA
1258II
22585EA
1259II
22596FA
1260II
22607GA
1261II
22618HA
1262JJ
2262KK
1263JJ
2263LL
1264JJ
2264MM
1265JJ
2265NN
1266JJ
2266OO
1267JJ
2267PP
1268JJ
2268QQ
1269JJ
2269RR
1270JJ
2270SS
1271JJ
2271TT
1272JJ
2272UU
1273JJ
2273VV
1274JJ
2274WW
1275JJ
2275XX
1276JJ
2276YY
1277JJ
2277ZZ
1278JJ
22781AA
1279JJ
22792BA
1280JJ
22803CA
1281JJ
22814DA
1282JJ
22825EA
1283JJ
22836FA
1284JJ
22847GA
1285JJ
22858HA
1286KK
2286LL
1287KK
2287MM
1288KK
2288NN
1289KK
2289OO
1290KK
2290PP
1291KK
2291QQ
1292KK
2292RR
1293KK
2293SS
1294KK
2294TT
1295KK
2295UU
1296KK
2296VV
1297KK
2297WW
1298KK
2298XX
1299KK
2299YY
1300KK
2300ZZ
1301KK
23011AA
1302KK
23022BA
1303KK
23033CA
1304KK
23044DA
1305KK
23055EA
1306KK
23066FA
1307KK
23077GA
1308KK
23088HA
1309LL
2309MM
1310LL
2310NN
1311LL
2311OO
1312LL
2312PP
1313LL
2313QQ
1314LL
2314RR
1315LL
2315SS
1316LL
2316TT
1317LL
2317UU
1318LL
2318VV
1319LL
2319WW
1320LL
2320XX
1321LL
2321YY
1322LL
2322ZZ
1323LL
23231AA
1324LL
23242BA
1325LL
23253CA
1326LL
23264DA
1327LL
23275EA
1328LL
23286FA
1329LL
23297GA
1330LL
23308HA
1331MM
2331NN
1332MM
2332OO
1333MM
2333PP
1334MM
2334QQ
1335MM
2335RR
1336MM
2336SS
1337MM
2337TT
1338MM
2338UU
1339MM
2339VV
1340MM
2340WW
1341MM
2341XX
1342MM
2342YY
1343MM
2343ZZ
1344MM
23441AA
1345MM
23452BA
1346MM
23463CA
1347MM
23474DA
1348MM
23485EA
1349MM
23496FA
1350MM
23507GA
1351MM
23518HA
1352NN
2352OO
1353NN
2353PP
1354NN
2354QQ
1355NN
2355RR
1356NN
2356SS
1357NN
2357TT
1358NN
2358UU
1359NN
2359VV
1360NN
2360WW
1361NN
2361XX
1362NN
2362YY
1363NN
2363ZZ
1364NN
23641AA
1365NN
23652BA
1366NN
23663CA
1367NN
23674DA
1368NN
23685EA
1369NN
23696FA
1370NN
23707GA
1371NN
23718HA
1372OO
2372PP
1373OO
2373QQ
1374OO
2374RR
1375OO
2375SS
1376OO
2376TT
1377OO
2377UU
1378OO
2378VV
1379OO
2379WW
1380OO
2380XX
1381OO
2381YY
1382OO
2382ZZ
1383OO
23831AA
1384OO
23842BA
1385OO
23853CA
1386OO
23864DA
1387OO
23875EA
1388OO
23886FA
1389OO
23897GA
1390OO
23908HA
1391PP
2391QQ
1392PP
2392RR
1393PP
2393SS
1394PP
2394TT
1395PP
2395UU
1396PP
2396VV
1397PP
2397WW
1398PP
2398XX
1399PP
2399YY
1400PP
2400ZZ
1401PP
24011AA
1402PP
24022BA
1403PP
24033CA
1404PP
24044DA
1405PP
24055EA
1406PP
24066FA
1407PP
24077GA
1408PP
24088HA
1409QQ
2409RR
1410QQ
2410SS
1411QQ
2411TT
1412QQ
2412UU
1413QQ
2413VV
1414QQ
2414WW
1415QQ
2415XX
1416QQ
2416YY
1417QQ
2417ZZ
1418QQ
24181AA
1419QQ
24192BA
1420QQ
24203CA
1421QQ
24214DA
1422QQ
24225EA
1423QQ
24236FA
1424QQ
24247GA
1425QQ
24258HA
1426RR
2426SS
1427RR
2427TT
1428RR
2428UU
1429RR
2429VV
1430RR
2430WW
1431RR
2431XX
1432RR
2432YY
1433RR
2433ZZ
1434RR
24341AA
1435RR
24352BA
1436RR
24363CA
1437RR
24374DA
1438RR
24385EA
1439RR
24396FA
1440RR
24407GA
1441RR
24418HA
1442SS
2442TT
1443SS
2443UU
1444SS
2444VV
1445SS
2445WW
1446SS
2446XX
1447SS
2447YY
1448SS
2448ZZ
1449SS
24491AA
1450SS
24502BA
1451SS
24513CA
1452SS
24524DA
1453SS
24535EA
1454SS
24546FA
1455SS
24557GA
1456SS
24568HA
1457TT
2457UU
1458TT
2458VV
1459TT
2459WW
1460TT
2460XX
1461TT
2461YY
1462TT
2462ZZ
1463TT
24631AA
1464TT
24642BA
1465TT
24653CA
1466TT
24664DA
1467TT
24675EA
1468TT
24686FA
1469TT
24697GA
1470TT
24708HA
1471UU
2471VV
1472UU
2472WW
1473UU
2473XX
1474UU
2474YY
1475UU
2475ZZ
1476UU
24761AA
1477UU
24772BA
1478UU
24783CA
1479UU
24794DA
1480UU
24805EA
1481UU
24816FA
1482UU
24827GA
1483UU
24838HA
1484VV
2484WW
1485VV
2485XX
1486VV
2486YY
1487VV
2487ZZ
1488VV
24881AA
1489VV
24892BA
1490VV
24903CA
1491VV
24914DA
1492VV
24925EA
1493VV
24936FA
1494VV
24947GA
1495VV
24958HA
1496WW
2496XX
1497WW
2497YY
1498WW
2498ZZ
1499WW
24991AA
1500WW
25002BA
1501WW
25013CA
1502WW
25024DA
1503WW
25035EA
1504WW
25046FA
1505WW
25057GA
1506WW
25068HA
1507XX
2507YY
1508XX
2508ZZ
1509XX
25091AA
1510XX
25102BA
1511XX
25113CA
1512XX
25124DA
1513XX
25135EA
1514XX
25146FA
1515XX
25157GA
1516XX
25168HA
1517YY
2517ZZ
1518YY
25181AA
1519YY
25192BA
1520YY
25203CA
1521YY
25214DA
1522YY
25225EA
1523YY
25236FA
1524YY
25247GA
1525YY
25258HA
1526ZZ
25261AA
1527ZZ
25272BA
1528ZZ
25283CA
1529ZZ
25294DA
1530ZZ
25305EA
1531ZZ
25316FA
1532ZZ
25327GA
1533ZZ
25338HA
15341AA
25342BA
15351AA
25353CA
15361AA
25364DA
15371AA
25375EA
15381AA
25386FA
15391AA
25397GA
15401AA
25408HA
15412BA
25413CA
15422BA
25424DA
15432BA
25435EA
15442BA
25446FA
15452BA
25457GA
15462BA
25468HA
15473CA
25474DA
15483CA
25485EA
15493CA
25496FA
15503CA
25507GA
15513CA
25518HA
15524DA
25525EA
15534DA
25536FA
15544DA
25547GA
15554DA
25558HA
15565EA
25566FA
15575EA
25577GA
15585EA
25588HA
15596FA
25597GA
15606FA
25608HA
15617GA
25618HA

NCS ensembles :
ID
1
2
3
4
5
6
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8
9
10
11
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13
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526
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531
532
533
534
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536
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538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561

-
Components

#1: Protein ...
Peptidase / ANCESTRAL BETA SUBUNIT


Mass: 26647.344 Da / Num. of mol.: 34 / Mutation: L94M, L112M,L228M
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Pseudomonas aeruginosa (bacteria)
Gene: AO946_34255, PAERUG_E15_London_28_01_14_04292, PAERUG_P32_London_17_VIM_2_10_11_02206
Production host: Escherichia coli (E. coli) / References: UniProt: A0A0D6I0H1
Has protein modificationY

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 3.11 Å3/Da / Density % sol: 60.39 %
Crystal growTemperature: 295 K / Method: vapor diffusion, hanging drop / Details: 0.1 M sodium acetate pH 4.8, 1.2 M sodium nitrate

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: SLS / Beamline: X10SA / Wavelength: 0.979 Å
DetectorType: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Dec 13, 2013
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.979 Å / Relative weight: 1
ReflectionResolution: 2.9→39.6 Å / Num. obs: 244138 / % possible obs: 99.6 % / Redundancy: 14.2 % / CC1/2: 0.998 / Rmerge(I) obs: 0.172 / Net I/σ(I): 14.33
Reflection shellResolution: 2.9→3.07 Å / Redundancy: 14.1 % / Rmerge(I) obs: 1.193 / Mean I/σ(I) obs: 2.31 / CC1/2: 0.822 / % possible all: 98.2

-
Processing

Software
NameVersionClassification
REFMAC5.8.0049refinement
XDSdata reduction
XDSdata scaling
SHELXDEphasing
RefinementMethod to determine structure: SAD / Resolution: 2.9→39.6 Å / Cor.coef. Fo:Fc: 0.943 / Cor.coef. Fo:Fc free: 0.93 / SU B: 33.691 / SU ML: 0.271 / Cross valid method: THROUGHOUT / ESU R Free: 0.334 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
RfactorNum. reflection% reflectionSelection details
Rfree0.2184 12254 5 %RANDOM
Rwork0.19783 ---
obs0.19886 231884 99.69 %-
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å
Displacement parametersBiso mean: 79.563 Å2
Baniso -1Baniso -2Baniso -3
1--0.92 Å2-0 Å25.34 Å2
2---6.22 Å20 Å2
3---2.94 Å2
Refinement stepCycle: 1 / Resolution: 2.9→39.6 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms62186 0 0 0 62186
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0120.01963478
X-RAY DIFFRACTIONr_bond_other_d0.0080.0259806
X-RAY DIFFRACTIONr_angle_refined_deg1.4461.98186530
X-RAY DIFFRACTIONr_angle_other_deg1.1233137088
X-RAY DIFFRACTIONr_dihedral_angle_1_deg5.66358160
X-RAY DIFFRACTIONr_dihedral_angle_2_deg37.39923.52720
X-RAY DIFFRACTIONr_dihedral_angle_3_deg18.008159282
X-RAY DIFFRACTIONr_dihedral_angle_4_deg17.31415476
X-RAY DIFFRACTIONr_chiral_restr0.0720.210030
X-RAY DIFFRACTIONr_gen_planes_refined0.0090.02173032
X-RAY DIFFRACTIONr_gen_planes_other0.0070.0214620
X-RAY DIFFRACTIONr_nbd_refined
X-RAY DIFFRACTIONr_nbd_other
X-RAY DIFFRACTIONr_nbtor_refined
X-RAY DIFFRACTIONr_nbtor_other
X-RAY DIFFRACTIONr_xyhbond_nbd_refined
X-RAY DIFFRACTIONr_xyhbond_nbd_other
X-RAY DIFFRACTIONr_metal_ion_refined
X-RAY DIFFRACTIONr_metal_ion_other
X-RAY DIFFRACTIONr_symmetry_vdw_refined
X-RAY DIFFRACTIONr_symmetry_vdw_other
X-RAY DIFFRACTIONr_symmetry_hbond_refined
X-RAY DIFFRACTIONr_symmetry_hbond_other
X-RAY DIFFRACTIONr_symmetry_metal_ion_refined
X-RAY DIFFRACTIONr_symmetry_metal_ion_other
X-RAY DIFFRACTIONr_mcbond_it3.4554.77232742
X-RAY DIFFRACTIONr_mcbond_other3.4554.77232741
X-RAY DIFFRACTIONr_mcangle_it5.437.16540868
X-RAY DIFFRACTIONr_mcangle_other5.437.16540869
X-RAY DIFFRACTIONr_scbond_it4.1825.03930736
X-RAY DIFFRACTIONr_scbond_other4.1825.03930737
X-RAY DIFFRACTIONr_scangle_it
X-RAY DIFFRACTIONr_scangle_other6.4097.43245663
X-RAY DIFFRACTIONr_long_range_B_refined9.13638.11467126
X-RAY DIFFRACTIONr_long_range_B_other9.13638.11467127
X-RAY DIFFRACTIONr_rigid_bond_restr
X-RAY DIFFRACTIONr_sphericity_free
X-RAY DIFFRACTIONr_sphericity_bonded
Refine LS restraints NCS

Refine-ID: X-RAY DIFFRACTION / Type: interatomic distance / Weight position: 0.05

Ens-IDDom-IDAuth asym-IDNumberRms dev position (Å)
11A139990.03
12B139990.03
21A140610.02
22C140610.02
31A140130.03
32D140130.03
41A139390.04
42E139390.04
51A139910.04
52F139910.04
61A140380.03
62G140380.03
71A139930.03
72H139930.03
81A140540.02
82I140540.02
91A139770.03
92J139770.03
101A139880.03
102K139880.03
111A140380.03
112L140380.03
121A140080.03
122M140080.03
131A139870.03
132N139870.03
141A140330.02
142O140330.02
151A140450.02
152P140450.02
161A140300.03
162Q140300.03
171A139910.03
172R139910.03
181A140110.03
182S140110.03
191A140030.03
192T140030.03
201A140040.03
202U140040.03
211A140580.02
212V140580.02
221A139740.04
222W139740.04
231A140410.02
232X140410.02
241A140120.03
242Y140120.03
251A140340.03
252Z140340.03
261A139620.03
2621139620.03
271A140060.03
2722140060.03
281A140570.02
2823140570.02
291A139480.04
2924139480.04
301A140120.03
3025140120.03
311A140130.03
3126140130.03
321A140080.03
3227140080.03
331A140570.02
3328140570.02
341B140330.03
342C140330.03
351B140050.03
352D140050.03
361B139760.03
362E139760.03
371B139660.04
372F139660.04
381B140040.03
382G140040.03
391B139680.04
392H139680.04
401B140310.03
402I140310.03
411B139740.03
412J139740.03
421B139510.04
422K139510.04
431B140370.03
432L140370.03
441B139620.04
442M139620.04
451B140150.03
452N140150.03
461B140130.03
462O140130.03
471B139710.03
472P139710.03
481B139760.03
482Q139760.03
491B139620.04
492R139620.04
501B140140.03
502S140140.03
511B139840.04
512T139840.04
521B139580.04
522U139580.04
531B140190.03
532V140190.03
541B140070.03
542W140070.03
551B139780.04
552X139780.04
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4872Z140060.03
4881V139380.04
48821139380.04
4891V139870.03
48922139870.03
4901V140380.02
49023140380.02
4911V139730.03
49124139730.03
4921V139980.03
49225139980.03
4931V139980.03
49326139980.03
4941V139950.03
49427139950.03
4951V140690.01
49528140690.01
4961W139880.03
4962X139880.03
4971W140080.03
4972Y140080.03
4981W139700.04
4982Z139700.04
4991W139340.04
49921139340.04
5001W140030.03
50022140030.03
5011W139630.04
50123139630.04
5021W140310.03
50224140310.03
5031W140230.03
50325140230.03
5041W140140.03
50426140140.03
5051W140620.03
50527140620.03
5061W140110.03
50628140110.03
5071X140510.02
5072Y140510.02
5081X140090.03
5082Z140090.03
5091X139350.03
50921139350.03
5101X140430.02
51022140430.02
5111X140270.03
51123140270.03
5121X139920.03
51224139920.03
5131X140270.02
51325140270.02
5141X140540.02
51426140540.02
5151X140240.03
51527140240.03
5161X140030.03
51628140030.03
5171Y140360.02
5172Z140360.02
5181Y139630.03
51821139630.03
5191Y140770.01
51922140770.01
5201Y140230.03
52023140230.03
5211Y140330.03
52124140330.03
5221Y140480.02
52225140480.02
5231Y140910
52326140910
5241Y140460.03
52427140460.03
5251Y140270.03
52528140270.03
5261Z140140.02
52621140140.02
5271Z140140.03
52722140140.03
5281Z140320.03
52823140320.03
5291Z139770.04
52924139770.04
5301Z140060.03
53025140060.03
5311Z140330.02
53126140330.02
5321Z140130.03
53227140130.03
5331Z140270.03
53328140270.03
53411139460.04
53422139460.04
53511139620.04
53523139620.04
53611139670.03
53624139670.03
53711139650.03
53725139650.03
53811139590.03
53826139590.03
53911139730.03
53927139730.03
54011139580.04
54028139580.04
54112140240.03
54123140240.03
54212140100.03
54224140100.03
54312140410.02
54325140410.02
54412140720.01
54426140720.01
54512140400.03
54527140400.03
54612140190.03
54628140190.03
54713139580.04
54724139580.04
54813139970.03
54825139970.03
54913140190.03
54926140190.03
55013140020.03
55027140020.03
55113140410.02
55128140410.02
55214139850.03
55225139850.03
55314140280.03
55326140280.03
55414140260.03
55427140260.03
55514139940.03
55528139940.03
55615140490.02
55626140490.02
55715140550.03
55727140550.03
55815140180.02
55828140180.02
55916140460.03
55927140460.03
56016140190.03
56028140190.03
56117140090.03
56128140090.03
LS refinement shellResolution: 2.896→2.971 Å / Total num. of bins used: 20
RfactorNum. reflection% reflection
Rfree0.399 862 -
Rwork0.356 16559 -
obs--96.43 %
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
12.91160.7361-0.51081.5569-0.72413.1420.1603-0.2546-0.02980.1016-0.15640.03240.22710.1498-0.00390.2636-0.05490.02730.1855-0.10250.0692209.75949.477194.0046
22.58410.7619-0.76751.2942-0.69243.7325-0.03710.4860.1635-0.17540.1445-0.1240.13090.0356-0.10740.236-0.0758-0.01830.24140.05360.1582213.078658.048662.9247
31.7470.6080.49253.5336-1.58863.61880.1191-0.0427-0.10220.4043-0.20510.00990.10950.2190.0860.3318-0.1020.06210.1598-0.05780.045188.881823.36291.0917
41.32310.5540.55683.2281-1.47173.9233-0.00480.10170.2181-0.11940.14230.17520.18340.183-0.13750.16820.0007-0.0550.0663-0.02090.1899184.494840.387563.9306
52.974-1.46731.16213.5063-0.21842.206-0.23270.0149-0.02630.53230.172-0.20630.26460.21570.06070.4410.00020.0340.0913-0.02760.0388189.0601-7.89778.4563
61.8081-0.83650.30852.6005-0.59343.3546-0.02840.15550.210.0535-0.0948-0.0592-0.04770.20780.12320.0961-0.0305-0.00960.1455-0.01750.1161172.87669.485156.6846
73.8737-1.06590.55591.91310.15132.1971-0.2382-0.10880.2440.05120.0727-0.25090.08520.22080.16550.30230.06870.03890.11880.04440.1294206.6986-27.814557.4961
83.318-1.59160.09922.4186-0.30763.06260.06640.3101-0.01620.0098-0.20080.1907-0.0318-0.22070.13440.0674-0.07460.04090.2963-0.12150.124180.243-19.574140.9441
93.24430.543-0.17531.7779-0.00512.0798-0.0688-0.4619-0.08640.0184-0.1325-0.16350.03620.12040.20130.14320.08240.03690.21780.060.0958229.4955-27.340632.8112
103.54110.29360.50411.1108-0.61862.3796-0.21390.10620.02410.09380.07030.21480.0771-0.26750.14350.1945-0.1060.08860.1383-0.1090.1659201.0907-32.146317.7947
112.06991.09920.21872.68830.20572.69850.0711-0.05490.00490.1724-0.1056-0.2163-0.11240.04620.03450.025-0.0175-0.04120.11690.03680.1033243.5383-5.32711.6599
123.14260.96190.74662.5125-0.41181.7569-0.26990.1191-0.182-0.23780.1660.1420.2122-0.14680.10390.1847-0.07910.02450.1185-0.06440.0934221.1557-20.2403-6.3107
131.53680.26021.07483.73960.79533.0486-0.0143-0.16190.27940.1613-0.0290.0867-0.0297-0.18320.04330.0406-0.0072-0.05130.0616-0.03050.1663237.817226.60293.0684
141.87240.12030.46173.36730.82321.9592-0.06390.023-0.0822-0.5251-0.10270.3346-0.0002-0.19610.16660.22010.038-0.10740.1225-0.05570.0818225.43089.5726-21.4507
152.0132-0.8694-0.56782.11450.54474.2533-0.0729-0.3610.23050.15290.278-0.08520.2359-0.0165-0.2050.05820.0445-0.09910.1166-0.11770.2388213.485949.31187.526
162.3487-0.8144-0.51882.83941.8824.26660.20130.2635-0.0512-0.2177-0.1268-0.13460.151-0.426-0.07450.11340.0197-0.03490.23110.06340.0916210.191239.6298-23.1437
172.5079-0.3121-0.36831.4031-0.4773.6890.0419-0.12480.02010.0664-0.08970.10340.32820.10730.04790.0761-0.0245-0.03390.1381-0.04540.1286180.8951.62516.1616
183.0075-0.0995-0.93291.34780.66974.33670.12080.78890.1928-0.1508-0.0173-0.06810.1159-0.2662-0.10360.06940.0007-0.05790.39140.19210.2042181.250855.5476-15.8438
191.95810.38970.7962.2527-2.00134.45130.15970.0592-0.07950.2283-0.12950.28260.12260.009-0.03030.0949-0.07390.03660.1718-0.08570.1675152.419833.562319.4905
201.99390.76880.58883.61-2.39443.9060.00170.22740.2868-0.39640.11840.31540.21630.0412-0.12010.1108-0.007-0.14950.12090.02130.3438148.983449.0621-8.626
211.8929-0.11960.71243.9372-0.15811.74380.1079-0.0726-0.04850.6473-0.2417-0.25680.1657-0.02580.13380.2987-0.2107-0.14410.23760.05540.1937139.73573.445511.8389
221.4468-0.2990.98623.225-0.01842.9128-0.0056-0.00590.3441-0.0407-0.1734-0.056-0.07290.12380.17890.0467-0.0071-0.11090.1333-0.01210.3658127.00923.5637-10.1012
232.3006-0.69841.32582.55370.02172.1286-0.01350.09560.06250.0406-0.1869-0.57960.02670.26840.20040.062-0.0235-0.0210.20980.15820.233147.2957-22.788-7.7033
241.9887-1.18050.22923.4472-0.11212.10410.16060.27340.117-0.3087-0.30970.084-0.15490.04820.14910.04460.0299-0.02260.2558-0.02890.1311124.5412-6.8935-24.3041
255.9884-0.36590.18711.01750.27552.7378-0.2928-0.4801-0.3107-0.03850.0489-0.13810.03240.4020.2440.14950.12960.10310.34210.15230.3591168.6193-30.0187-32.7396
265.5276-1.04510.3481.18-0.19932.9773-0.15150.6246-0.39110.0139-0.08450.0749-0.0643-0.25620.23590.0911-0.08910.07540.3793-0.14710.277139.9593-26.5393-47.2091
273.68461.53410.55463.00620.22883.00330.1113-0.451-0.07020.1714-0.3525-0.3768-0.23990.21770.24120.0849-0.01810.0690.40570.1140.3117188.0628-14.5342-55.4378
284.38121.57540.4482.443-0.27372.1493-0.39210.24930.2204-0.26720.16230.28810.0549-0.39040.22980.2799-0.07610.05580.3133-0.11530.2743162.4747-24.6768-72.323
291.86171.04070.74853.9670.83112.71370.013-0.27760.27660.2505-0.28190.1391-0.1678-0.26510.26890.1662-0.01860.0020.2703-0.04970.3049192.619515.654-69.8246
302.35151.27871.01083.72580.46922.1385-0.1106-0.0395-0.0165-0.62230.00450.43920.0928-0.2590.10610.4140.04570.00640.2141-0.07650.2235177.686-2.1485-92.3377
311.7722-1.51830.01324.51552.58974.05480.0038-0.21610.45520.40580.3452-0.72690.21670.0944-0.34910.28720.0521-0.14020.2084-0.13070.5012177.124345.1738-74.6753
321.8276-1.14570.23934.04012.12563.87440.31430.1658-0.0383-0.6686-0.2836-0.3386-0.1439-0.1877-0.03070.43750.17050.14560.31790.01640.2522174.142429.6835-102.9385
332.9496-0.3234-0.90071.3861-0.58363.6282-0.0385-0.46150.13580.09640.1173-0.02490.24240.1101-0.07870.22660.0247-0.02350.2837-0.15220.2133146.37258.6467-72.1758
342.9925-0.2259-0.50361.07340.20893.37840.01250.3685-0.0538-0.1248-0.1423-0.13850.511-0.09570.12980.30590.01270.10760.30110.04830.1707150.459253.546-103.8639
Refinement TLS group
IDRefine-IDRefine TLS-IDAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1A1 - 241
2X-RAY DIFFRACTION2B1 - 241
3X-RAY DIFFRACTION3C1 - 241
4X-RAY DIFFRACTION4D1 - 241
5X-RAY DIFFRACTION5E1 - 241
6X-RAY DIFFRACTION6F1 - 241
7X-RAY DIFFRACTION7G1 - 241
8X-RAY DIFFRACTION8H1 - 241
9X-RAY DIFFRACTION9I1 - 241
10X-RAY DIFFRACTION10J1 - 241
11X-RAY DIFFRACTION11K1 - 241
12X-RAY DIFFRACTION12L1 - 241
13X-RAY DIFFRACTION13M1 - 241
14X-RAY DIFFRACTION14N1 - 241
15X-RAY DIFFRACTION15O1 - 241
16X-RAY DIFFRACTION16P1 - 241
17X-RAY DIFFRACTION17Q1 - 241
18X-RAY DIFFRACTION18R1 - 241
19X-RAY DIFFRACTION19S1 - 241
20X-RAY DIFFRACTION20T1 - 241
21X-RAY DIFFRACTION21U1 - 241
22X-RAY DIFFRACTION22V1 - 241
23X-RAY DIFFRACTION23W1 - 241
24X-RAY DIFFRACTION24X1 - 241
25X-RAY DIFFRACTION25Y1 - 241
26X-RAY DIFFRACTION26Z1 - 241
27X-RAY DIFFRACTION2711 - 241
28X-RAY DIFFRACTION2821 - 241
29X-RAY DIFFRACTION2931 - 241
30X-RAY DIFFRACTION3041 - 241
31X-RAY DIFFRACTION3151 - 241
32X-RAY DIFFRACTION3261 - 241
33X-RAY DIFFRACTION3371 - 241
34X-RAY DIFFRACTION3481 - 241

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