- PDB-5jr8: Disposal of Iron by a Mutant form of Siderocalin NGAL -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 5jr8
Title
Disposal of Iron by a Mutant form of Siderocalin NGAL
Components
Neutrophil gelatinase-associated lipocalin
Keywords
Siderophore binding protein / Fe-Siderophore binding protein mutant
Function / homology
Function and homology information
siderophore transport / Metal sequestration by antimicrobial proteins / iron ion sequestering activity / enterobactin binding / Iron uptake and transport / specific granule lumen / positive regulation of cold-induced thermogenesis / Interleukin-4 and Interleukin-13 signaling / defense response to bacterium / iron ion binding ...siderophore transport / Metal sequestration by antimicrobial proteins / iron ion sequestering activity / enterobactin binding / Iron uptake and transport / specific granule lumen / positive regulation of cold-induced thermogenesis / Interleukin-4 and Interleukin-13 signaling / defense response to bacterium / iron ion binding / innate immune response / apoptotic process / Neutrophil degranulation / extracellular space / extracellular exosome / extracellular region / identical protein binding Similarity search - Function
Resolution: 2.65→98.29 Å / Cor.coef. Fo:Fc: 0.953 / Cor.coef. Fo:Fc free: 0.942 / SU B: 17.07 / SU ML: 0.17 / Cross valid method: THROUGHOUT / ESU R: 0.315 / ESU R Free: 0.224 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2092
961
5.1 %
RANDOM
Rwork
0.1794
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obs
0.18092
18053
99.87 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å