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Yorodumi- PDB-5ify: Crystal structure of Glucose-1-phosphate thymidylyltransferase fr... -
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-Basic information
Entry | Database: PDB / ID: 5ify | ||||||
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Title | Crystal structure of Glucose-1-phosphate thymidylyltransferase from Burkholderia vietnamiensis in complex with 2 -Deoxyuridine-5'-monophosphate and 2'-Deoxy-Thymidine-B-L-Rhamnose | ||||||
Components | Glucose-1-phosphate thymidylyltransferase | ||||||
Keywords | TRANSFERASE / SSGCID / Glucose-1-phosphate thymidylyltransferase / 2'-Deoxy-Thymidine-B-L-Rhamnose / 2 -Deoxyuridine-5'-monophosphate / Structural Genomics / Seattle Structural Genomics Center for Infectious Disease | ||||||
Function / homology | Function and homology information glucose-1-phosphate thymidylyltransferase / glucose-1-phosphate thymidylyltransferase activity / extracellular polysaccharide biosynthetic process / metal ion binding Similarity search - Function | ||||||
Biological species | Burkholderia vietnamiensis (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 2.25 Å | ||||||
Authors | Seattle Structural Genomics Center for Infectious Disease (SSGCID) | ||||||
Citation | Journal: to be published Title: Crystal structure of Glucose-1-phosphate thymidylyltransferase from Burkholderia vietnamiensis in complex with 2'-Deoxyuridine-5'-monophosphate and 2'-Deoxy-Thymidine-B-L-Rhamnose Authors: Abendroth, J. / Dranow, D.M. / Lorimer, D. / Edwards, T.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5ify.cif.gz | 707.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5ify.ent.gz | 584.1 KB | Display | PDB format |
PDBx/mmJSON format | 5ify.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5ify_validation.pdf.gz | 4.1 MB | Display | wwPDB validaton report |
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Full document | 5ify_full_validation.pdf.gz | 4.1 MB | Display | |
Data in XML | 5ify_validation.xml.gz | 70.4 KB | Display | |
Data in CIF | 5ify_validation.cif.gz | 99.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/if/5ify ftp://data.pdbj.org/pub/pdb/validation_reports/if/5ify | HTTPS FTP |
-Related structure data
Related structure data | 1fxoS S: Starting model for refinement |
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Similar structure data | |
Other databases |
-Links
-Assembly
Deposited unit |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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