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Yorodumi- PDB-5iej: Solution structure of the BeF3-activated conformation of SdrG fro... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5iej | ||||||
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Title | Solution structure of the BeF3-activated conformation of SdrG from Pseudomonas melonis Fr1 | ||||||
Components | SdrG | ||||||
Keywords | PROTEIN / Single domain response regulator FAT GUY response regulator Allosteric transition General stress response | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Sphingomonas melonis Fr1 (bacteria) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Campagne, S. / Vorholt, J.A. / Allain, F.H.-T. | ||||||
Citation | Journal: Structure / Year: 2016 Title: Role of the PFXFATG[G/Y] Motif in the Activation of SdrG, a Response Regulator Involved in the Alphaproteobacterial General Stress Response. Authors: Campagne, S. / Dintner, S. / Gottschlich, L. / Thibault, M. / Bortfeld-Miller, M. / Kaczmarczyk, A. / Francez-Charlot, A. / Allain, F.H. / Vorholt, J.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5iej.cif.gz | 679.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5iej.ent.gz | 597.1 KB | Display | PDB format |
PDBx/mmJSON format | 5iej.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ie/5iej ftp://data.pdbj.org/pub/pdb/validation_reports/ie/5iej | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 13892.781 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Sphingomonas melonis Fr1 (bacteria) / Production host: Escherichia coli (E. coli) / References: UniProt: A0A1C7D1A8*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 1 mM [U-99% 13C; U-99% 15N] BeF3-activated conformation of SdrG, 10 mM sodium phosphate, 50 mM sodium chloride, 5 mM beryllium Chloride, 30 mM sodium fluoride, 10 mM magnesium chloride, 90% H2O/10% D2O Label: 13C15N / Solvent system: 90% H2O/10% D2O | ||||||||||||||||||||||||||||
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Sample |
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Sample conditions | Details: NaPO4 10 mM pH6.5 NaCl 50mM MgCl2 10mM NaF 30 mM BeCl2 5mM Ionic strength: 105 mM / Label: 13C15N / pH: 6.5 / Pressure: AMBIENT Pa / Temperature: 293 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 4 | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 30 / Conformers submitted total number: 20 |