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Open data
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Basic information
Entry | Database: PDB / ID: 5hwh | ||||||
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Title | Structure of a cysteine hydrolase with a positive substrate | ||||||
![]() | Isochorismatase | ||||||
![]() | HYDROLASE / catalyic triad | ||||||
Function / homology | Isochorismatase-like / Isochorismatase-like superfamily / Isochorismatase family / hydrolase activity / (1~{S},4~{R})-3-azabicyclo[2.2.1]hept-5-en-2-one / Isochorismatase![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Feng, Y. / Gao, S. | ||||||
![]() | ![]() Title: Structure of a cysteine hydrolase Authors: Gao, S. / Feng, Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 52.3 KB | Display | ![]() |
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PDB format | ![]() | 36.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 434.3 KB | Display | ![]() |
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Full document | ![]() | 434.5 KB | Display | |
Data in XML | ![]() | 11.2 KB | Display | |
Data in CIF | ![]() | 16.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 20425.797 Da / Num. of mol.: 1 / Mutation: C111A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Production host: ![]() ![]() |
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#2: Chemical | ChemComp-66Z / ( |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.96 Å3/Da / Density % sol: 58.5 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / Details: PEG 3350, sodium malonate |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Nov 8, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.979 Å / Relative weight: 1 |
Reflection | Resolution: 1.79→50 Å / Num. obs: 26655 / % possible obs: 98.2 % / Redundancy: 11.1 % / Net I/σ(I): 32.7 |
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Processing
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Refinement | Resolution: 1.79→24.75 Å / SU ML: 0.17 / Cross valid method: FREE R-VALUE / σ(F): 1.93 / Phase error: 20.71 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.79→24.75 Å
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Refine LS restraints |
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LS refinement shell |
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