+
Open data
-
Basic information
Entry | Database: PDB / ID: 5gm0 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | Tl-gal with lactose | |||||||||
![]() | galectin | |||||||||
![]() | SUGAR BINDING PROTEIN / Carbohydrates / Toxascaris leonina / Galectin | |||||||||
Function / homology | ![]() galactoside binding / carbohydrate binding / membrane raft / plasma membrane Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Hwang, E.Y. | |||||||||
Funding support | ![]()
| |||||||||
![]() | ![]() Title: Structural Basis for Carbohydrate Recognition and Anti-inflammatory Modulation by Gastrointestinal Nematode Parasite Toxascaris leonina Galectin Authors: Hwang, E.Y. / Jeong, M.S. / Park, S.K. / Ha, S.C. / Yu, H.S. / Jang, S.B. #1: ![]() Title: Structure of full-length Toxascaris leonina galectin with two carbohydrate-recognition domains Authors: Jeong, M.S. / Hwang, H.G. / Yu, H.S. / Jang, S.B. | |||||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 137.4 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 104.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | ![]() 5gltC ![]() 5gluC ![]() 5glvC ![]() 5glwC ![]() 5glzC ![]() 4hl0S C: citing same article ( S: Starting model for refinement |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
2 | ![]()
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 32324.168 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Polysaccharide | #3: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 3.01 Å3/Da / Density % sol: 59.08 % |
---|---|
Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop Details: polyethylene glycol 4000, 0.1M Na HEPES pH 7.5, 0.1M ammonium sulfate |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() |
Detector | Type: MAC Science DIP-320 / Detector: IMAGE PLATE / Date: Jun 24, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.987 Å / Relative weight: 1 |
Reflection | Resolution: 1.7→30 Å / Num. obs: 81697 / % possible obs: 98.7 % / Redundancy: 3.7 % / Rmerge(I) obs: 0.073 / Net I/σ(I): 23.7 |
Reflection shell | Resolution: 1.7→1.76 Å / Rmerge(I) obs: 0.33 |
-
Processing
Software |
| ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: 4HL0 Resolution: 1.7→30 Å / Cross valid method: FREE R-VALUE / σ(F): 0
| ||||||||||||||||||||
Solvent computation | Bsol: 64.5014 Å2 | ||||||||||||||||||||
Displacement parameters | Biso max: 80.23 Å2 / Biso mean: 26.6831 Å2 / Biso min: 11 Å2
| ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.7→30 Å
| ||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||
Xplor file |
|