- PDB-5e5i: Structure of the ornithine aminotransferase from Toxoplasma gondi... -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 5e5i
Title
Structure of the ornithine aminotransferase from Toxoplasma gondii in complex with inactivator
Components
Ornithine aminotransferase, mitochondrial
Keywords
TRANSFERASE / inhibitor / complex / parasite / PYRIDOXAL 5'-PHOSPHATE / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID
Function / homology
Function and homology information
arginine catabolic process to proline via ornithine / ornithine aminotransferase activity / ornithine aminotransferase / arginine catabolic process to glutamate / L-proline biosynthetic process / pyridoxal phosphate binding / identical protein binding / cytoplasm Similarity search - Function
Resolution: 1.7→30 Å / Cor.coef. Fo:Fc: 0.976 / Cor.coef. Fo:Fc free: 0.962 / SU B: 6.033 / SU ML: 0.097 / Cross valid method: THROUGHOUT / ESU R: 0.115 / ESU R Free: 0.113 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.20784
4073
5 %
RANDOM
Rwork
0.16849
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obs
0.17054
77255
92.39 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK