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Open data
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Basic information
| Entry | Database: PDB / ID: 5bw9 | ||||||
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| Title | Crystal Structure of Yeast V1-ATPase in the Autoinhibited Form | ||||||
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Keywords | HYDROLASE / Autoinhibition | ||||||
| Function / homology | Function and homology informationvacuole-mitochondrion membrane contact site / Insulin receptor recycling / Transferrin endocytosis and recycling / ROS and RNS production in phagocytes / Amino acids regulate mTORC1 / Golgi lumen acidification / proteasome storage granule assembly / vacuolar proton-transporting V-type ATPase, V1 domain / endosomal lumen acidification / proton-transporting V-type ATPase complex ...vacuole-mitochondrion membrane contact site / Insulin receptor recycling / Transferrin endocytosis and recycling / ROS and RNS production in phagocytes / Amino acids regulate mTORC1 / Golgi lumen acidification / proteasome storage granule assembly / vacuolar proton-transporting V-type ATPase, V1 domain / endosomal lumen acidification / proton-transporting V-type ATPase complex / pexophagy / intron homing / intein-mediated protein splicing / vacuolar proton-transporting V-type ATPase complex / vacuolar acidification / fungal-type vacuole membrane / proton-transporting ATPase activity, rotational mechanism / ATP metabolic process / H+-transporting two-sector ATPase / Neutrophil degranulation / proton transmembrane transport / transmembrane transport / intracellular calcium ion homeostasis / cytoplasmic stress granule / endonuclease activity / Hydrolases; Acting on ester bonds / membrane raft / Golgi membrane / mRNA binding / ATP hydrolysis activity / DNA binding / ATP binding / cytoplasm Similarity search - Function | ||||||
| Biological species | ![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 7 Å | ||||||
Authors | Oot, R.A. / Kane, P.M. / Berry, E.A. / Wilkens, S. | ||||||
| Funding support | United States, 1items
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Citation | Journal: Embo J. / Year: 2016Title: Crystal structure of yeast V1-ATPase in the autoinhibited state. Authors: Oot, R.A. / Kane, P.M. / Berry, E.A. / Wilkens, S. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5bw9.cif.gz | 1.3 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb5bw9.ent.gz | 962.7 KB | Display | PDB format |
| PDBx/mmJSON format | 5bw9.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 5bw9_validation.pdf.gz | 623.3 KB | Display | wwPDB validaton report |
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| Full document | 5bw9_full_validation.pdf.gz | 687 KB | Display | |
| Data in XML | 5bw9_validation.xml.gz | 246.9 KB | Display | |
| Data in CIF | 5bw9_validation.cif.gz | 339.2 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bw/5bw9 ftp://data.pdbj.org/pub/pdb/validation_reports/bw/5bw9 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 5d80C ![]() 3vr5S S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: 1
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About Yorodumi





X-RAY DIFFRACTION
United States, 1items
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