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- PDB-4zgw: Short-chain dehydrogenase/reductase from Serratia marcescens BCRC... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4zgw | ||||||
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Title | Short-chain dehydrogenase/reductase from Serratia marcescens BCRC 10948 | ||||||
![]() | short-chain dehydrogenase/reductase | ||||||
![]() | OXIDOREDUCTASE / short-chain dehydrogenase/reductase Serratia marcescens | ||||||
Function / homology | : / Enoyl-(Acyl carrier protein) reductase / Short-chain dehydrogenase/reductase SDR / NAD(P)-binding Rossmann-like Domain / NAD(P)-binding domain superfamily / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta / Putative oxidoreductase![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wang, W.-C. | ||||||
![]() | ![]() Title: Stereoselective synthesis of (R)-phenylephrine using recombinant Escherichia coli cells expressing a novel short-chain dehydrogenase/reductase gene from Serratia marcescens BCRC 10948 Authors: Hsu, W.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 102.2 KB | Display | ![]() |
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PDB format | ![]() | 76.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 3v2gS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 29653.363 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() References: UniProt: V5YUZ7*PLUS, 3-oxoacyl-[acyl-carrier-protein] reductase #2: Water | ChemComp-HOH / | Sequence details | THE N-TERMINAL AMINO ACIDS 1-39 ARE SEGEMENTS ON THE PET30A PLASMID. | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.71 Å3/Da / Density % sol: 27.9 % |
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Crystal grow | Temperature: 293.15 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: 0.8 M sodium formate, 0.1 M sodium cacodylate, 25% w/v PEG 2000 MME |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Oct 18, 2014 |
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.47→20 Å / Num. obs: 69956 / % possible obs: 99.8 % / Redundancy: 11.4 % / Rmerge(I) obs: 0.076 / Rsym value: 0.076 / Net I/σ(I): 36.66 |
Reflection shell | Resolution: 1.47→1.52 Å / Redundancy: 11.3 % / Mean I/σ(I) obs: 4.44 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 3V2G Resolution: 1.47→19.889 Å / Cor.coef. Fo:Fc: 0.967 / Cor.coef. Fo:Fc free: 0.958 / SU B: 1.025 / SU ML: 0.04 / Cross valid method: THROUGHOUT / ESU R: 0.069 / ESU R Free: 0.07 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 18.231 Å2
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Refinement step | Cycle: LAST / Resolution: 1.47→19.889 Å
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Refine LS restraints |
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