- PDB-4yuu: Crystal structure of oxygen-evolving photosystem II from a red alga -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 4yuu
Title
Crystal structure of oxygen-evolving photosystem II from a red alga
Components
(Cytochrome b559 subunit ...) x 2
(PEPTIDE CHAIN ...) x 2
(PHOTOSYSTEM II REACTION CENTER PROTEIN ...) x 10
(Photosystem II ...) x 6
Cytochrome c-550
Extrinsic protein in photosystem II
Keywords
PHOTOSYNTHESIS / TRANSMEMBRANE ALPHA-HELIX / ELECTRON TRANSPORT / PHOTOSYSTEM II / WATER-SPLITTING / OXYGEN-EVOLVING / IRON BINDING / CALCIUM BINDING / MANGANESE BINDING / CHLORIDE BINDING / THYLAKOID MEMBRANE
Function / homology
Function and homology information
cytochrome c-heme linkage / : / photosystem II oxygen evolving complex / photosystem II stabilization / photosystem II / photosystem II reaction center / : / oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor / photosynthetic electron transport chain / response to herbicide ...cytochrome c-heme linkage / : / photosystem II oxygen evolving complex / photosystem II stabilization / photosystem II / photosystem II reaction center / : / oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor / photosynthetic electron transport chain / response to herbicide / photosystem II / extrinsic component of membrane / chlorophyll binding / photosynthesis, light reaction / electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity / phosphate ion binding / chloroplast thylakoid membrane / photosynthetic electron transport in photosystem II / photosynthesis / respiratory electron transport chain / membrane => GO:0016020 / protein stabilization / electron transfer activity / iron ion binding / calcium ion binding / heme binding / metal ion binding Similarity search - Function
Oxygen-evolving enhancer protein 3 / Oxygen evolving enhancer protein 3 / PsbQ-like domain superfamily / Photosystem II PsbU, oxygen evolving complex / Photosystem II 12 kDa extrinsic protein (PsbU) / Photosystem II PsbV, cytochrome c-550 precursor / Photosystem II cytochrome c-550 precursor / Cytochrome c-550 domain / Cytochrome c-550 domain / Photosystem II PsbJ ...Oxygen-evolving enhancer protein 3 / Oxygen evolving enhancer protein 3 / PsbQ-like domain superfamily / Photosystem II PsbU, oxygen evolving complex / Photosystem II 12 kDa extrinsic protein (PsbU) / Photosystem II PsbV, cytochrome c-550 precursor / Photosystem II cytochrome c-550 precursor / Cytochrome c-550 domain / Cytochrome c-550 domain / Photosystem II PsbJ / Photosystem II PsbJ superfamily / PsbJ / Photosystem II reaction centre protein Ycf12 / Photosystem II complex subunit Ycf12 / Photosystem II PsbT / Photosystem II PsbL / Photosystem II PsbL superfamily / Photosystem II PsbT superfamily / Photosystem II reaction centre T protein / PsbL protein / Photosystem II CP43 reaction centre protein / Photosystem II PsbK / Photosystem II PsbK superfamily / Photosystem II 4 kDa reaction centre component / Photosystem II CP47 reaction centre protein / Photosystem II PsbI / Photosystem II PsbI superfamily / Photosystem II reaction centre I protein (PSII 4.8 kDa protein) / Photosystem II reaction centre protein H / Photosystem II protein D1 / Photosystem II D2 protein / Photosystem II cytochrome b559, conserved site / Photosystem II cytochrome b559, alpha subunit / Photosystem II cytochrome b559, beta subunit / Photosystem II cytochrome b559, N-terminal / Photosystem II cytochrome b559, alpha subunit, lumenal region / Photosystem II reaction centre protein H superfamily / Photosystem II cytochrome b559, alpha subunit superfamily / Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits / Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit / Photosystem II 10 kDa phosphoprotein / Cytochrome b559 subunits heme-binding site signature. / Photosystem antenna protein-like / Photosystem antenna protein-like superfamily / Photosystem II protein / Photosynthetic reaction centre, L/M / Photosystem II protein D1/D2 superfamily / Photosynthetic reaction centre protein / Photosynthetic reaction center proteins signature. / Cytochrome c family profile. / Cytochrome c-like domain / Cytochrome c-like domain superfamily / Twin arginine translocation (Tat) signal profile. / Twin-arginine translocation pathway, signal sequence Similarity search - Domain/homology
BETA-CAROTENE / BICARBONATE ION / CHLOROPHYLL A / DIGALACTOSYL DIACYL GLYCEROL (DGDG) / : / PROTOPORPHYRIN IX CONTAINING FE / 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE / 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE / CA-MN4-O5 CLUSTER / PHEOPHYTIN A ...BETA-CAROTENE / BICARBONATE ION / CHLOROPHYLL A / DIGALACTOSYL DIACYL GLYCEROL (DGDG) / : / PROTOPORPHYRIN IX CONTAINING FE / 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE / 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE / CA-MN4-O5 CLUSTER / PHEOPHYTIN A / Chem-PL9 / Chem-SQD / Unknown ligand / Photosystem II reaction center protein I / Photosystem II protein D1 / Photosystem II reaction center protein H / Photosystem II reaction center protein T / Photosystem II CP47 reaction center protein / Extrinsic protein in photosystem II / Cytochrome c-550 / Photosystem II reaction center protein K / Photosystem II reaction center protein Ycf12 / Cytochrome b559 subunit alpha / Cytochrome b559 subunit beta / Photosystem II reaction center protein L / Photosystem II reaction center protein J / Photosystem II CP43 reaction center protein / Photosystem II D2 protein / Photosystem II 12 kDa extrinsic protein, chloroplastic Similarity search - Component
Biological species
Cyanidium caldarium (eukaryote)
Method
X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2.77000368116 Å
#1: Journal: Biochim. Biophys. Acta / Year: 2009 Title: Towards structural elucidation of eukaryotic photosystem II: Purification, crystallization and preliminary X-ray diffraction analysis of photosystem II from a red alga. Authors: Adachi, H. / Umena, Y. / Enami, I. / Henmi, T. / Kamiya, N. / Shen, J.-R.
#191 - Nov 2015 Glutamate-gated Chloride Receptors similarity (1)
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Assembly
Deposited unit
A1: Photosystem II protein D1 B1: Photosystem II CP47 reaction center protein C1: Photosystem II CP43 reaction center protein D1: Photosystem II D2 protein E1: Cytochrome b559 subunit alpha F1: Cytochrome b559 subunit beta H1: Photosystem II reaction center protein H I1: Photosystem II reaction center protein I J1: Photosystem II reaction center protein J K1: Photosystem II reaction center protein K L1: Photosystem II reaction center protein L M1: PHOTOSYSTEM II REACTION CENTER PROTEIN M O1: PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO T1: Photosystem II reaction center protein T U1: Photosystem II 12 kDa extrinsic protein, chloroplastic V1: Cytochrome c-550 Y1: Photosystem II reaction center protein Ycf12 X1: PHOTOSYSTEM II REACTION CENTER PROTEIN X S1: PEPTIDE CHAIN UNASSIGNED W1: PEPTIDE CHAIN UNASSIGNED a1: Photosystem II protein D1 b1: Photosystem II CP47 reaction center protein c1: Photosystem II CP43 reaction center protein d1: Photosystem II D2 protein e1: Cytochrome b559 subunit alpha f1: Cytochrome b559 subunit beta h1: Photosystem II reaction center protein H i1: Photosystem II reaction center protein I j1: Photosystem II reaction center protein J k1: Photosystem II reaction center protein K l1: Photosystem II reaction center protein L m1: PHOTOSYSTEM II REACTION CENTER PROTEIN M o1: PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO t1: Photosystem II reaction center protein T u1: Photosystem II 12 kDa extrinsic protein, chloroplastic v1: Cytochrome c-550 y1: Photosystem II reaction center protein Ycf12 x1: PHOTOSYSTEM II REACTION CENTER PROTEIN X s1: PEPTIDE CHAIN UNASSIGNED w1: PEPTIDE CHAIN UNASSIGNED q1: Extrinsic protein in photosystem II A2: Photosystem II protein D1 B2: Photosystem II CP47 reaction center protein C2: Photosystem II CP43 reaction center protein D2: Photosystem II D2 protein E2: Cytochrome b559 subunit alpha F2: Cytochrome b559 subunit beta H2: Photosystem II reaction center protein H I2: Photosystem II reaction center protein I J2: Photosystem II reaction center protein J K2: Photosystem II reaction center protein K L2: Photosystem II reaction center protein L M2: PHOTOSYSTEM II REACTION CENTER PROTEIN M O2: PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO T2: Photosystem II reaction center protein T U2: Photosystem II 12 kDa extrinsic protein, chloroplastic V2: Cytochrome c-550 Y2: Photosystem II reaction center protein Ycf12 X2: PHOTOSYSTEM II REACTION CENTER PROTEIN X S2: PEPTIDE CHAIN UNASSIGNED W2: PEPTIDE CHAIN UNASSIGNED Q2: Extrinsic protein in photosystem II Z2: Photosystem II reaction center protein Z a2: Photosystem II protein D1 b2: Photosystem II CP47 reaction center protein c2: Photosystem II CP43 reaction center protein d2: Photosystem II D2 protein e2: Cytochrome b559 subunit alpha f2: Cytochrome b559 subunit beta h2: Photosystem II reaction center protein H i2: Photosystem II reaction center protein I j2: Photosystem II reaction center protein J k2: Photosystem II reaction center protein K l2: Photosystem II reaction center protein L m2: PHOTOSYSTEM II REACTION CENTER PROTEIN M o2: PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO t2: Photosystem II reaction center protein T u2: Photosystem II 12 kDa extrinsic protein, chloroplastic v2: Cytochrome c-550 y2: Photosystem II reaction center protein Ycf12 x2: PHOTOSYSTEM II REACTION CENTER PROTEIN X s2: PEPTIDE CHAIN UNASSIGNED w2: PEPTIDE CHAIN UNASSIGNED z2: Photosystem II reaction center protein Z hetero molecules
A1: Photosystem II protein D1 B1: Photosystem II CP47 reaction center protein C1: Photosystem II CP43 reaction center protein D1: Photosystem II D2 protein E1: Cytochrome b559 subunit alpha F1: Cytochrome b559 subunit beta H1: Photosystem II reaction center protein H I1: Photosystem II reaction center protein I J1: Photosystem II reaction center protein J K1: Photosystem II reaction center protein K L1: Photosystem II reaction center protein L M1: PHOTOSYSTEM II REACTION CENTER PROTEIN M O1: PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO T1: Photosystem II reaction center protein T U1: Photosystem II 12 kDa extrinsic protein, chloroplastic V1: Cytochrome c-550 Y1: Photosystem II reaction center protein Ycf12 X1: PHOTOSYSTEM II REACTION CENTER PROTEIN X S1: PEPTIDE CHAIN UNASSIGNED W1: PEPTIDE CHAIN UNASSIGNED hetero molecules
a1: Photosystem II protein D1 b1: Photosystem II CP47 reaction center protein c1: Photosystem II CP43 reaction center protein d1: Photosystem II D2 protein e1: Cytochrome b559 subunit alpha f1: Cytochrome b559 subunit beta h1: Photosystem II reaction center protein H i1: Photosystem II reaction center protein I j1: Photosystem II reaction center protein J k1: Photosystem II reaction center protein K l1: Photosystem II reaction center protein L m1: PHOTOSYSTEM II REACTION CENTER PROTEIN M o1: PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO t1: Photosystem II reaction center protein T u1: Photosystem II 12 kDa extrinsic protein, chloroplastic v1: Cytochrome c-550 y1: Photosystem II reaction center protein Ycf12 x1: PHOTOSYSTEM II REACTION CENTER PROTEIN X s1: PEPTIDE CHAIN UNASSIGNED w1: PEPTIDE CHAIN UNASSIGNED q1: Extrinsic protein in photosystem II hetero molecules
A2: Photosystem II protein D1 B2: Photosystem II CP47 reaction center protein C2: Photosystem II CP43 reaction center protein D2: Photosystem II D2 protein E2: Cytochrome b559 subunit alpha F2: Cytochrome b559 subunit beta H2: Photosystem II reaction center protein H I2: Photosystem II reaction center protein I J2: Photosystem II reaction center protein J K2: Photosystem II reaction center protein K L2: Photosystem II reaction center protein L M2: PHOTOSYSTEM II REACTION CENTER PROTEIN M O2: PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO T2: Photosystem II reaction center protein T U2: Photosystem II 12 kDa extrinsic protein, chloroplastic V2: Cytochrome c-550 Y2: Photosystem II reaction center protein Ycf12 X2: PHOTOSYSTEM II REACTION CENTER PROTEIN X S2: PEPTIDE CHAIN UNASSIGNED W2: PEPTIDE CHAIN UNASSIGNED Q2: Extrinsic protein in photosystem II Z2: Photosystem II reaction center protein Z hetero molecules
a2: Photosystem II protein D1 b2: Photosystem II CP47 reaction center protein c2: Photosystem II CP43 reaction center protein d2: Photosystem II D2 protein e2: Cytochrome b559 subunit alpha f2: Cytochrome b559 subunit beta h2: Photosystem II reaction center protein H i2: Photosystem II reaction center protein I j2: Photosystem II reaction center protein J k2: Photosystem II reaction center protein K l2: Photosystem II reaction center protein L m2: PHOTOSYSTEM II REACTION CENTER PROTEIN M o2: PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO t2: Photosystem II reaction center protein T u2: Photosystem II 12 kDa extrinsic protein, chloroplastic v2: Cytochrome c-550 y2: Photosystem II reaction center protein Ycf12 x2: PHOTOSYSTEM II REACTION CENTER PROTEIN X s2: PEPTIDE CHAIN UNASSIGNED w2: PEPTIDE CHAIN UNASSIGNED z2: Photosystem II reaction center protein Z hetero molecules