登録情報 | データベース: PDB / ID: 4yek |
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タイトル | X-ray structure of the thymidine phosphorylase from Salmonella typhimurium in complex with thymidine |
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要素 | Thymidine phosphorylase |
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キーワード | TRANSFERASE / thymidine phosphorylase / nucleoside / metabolism |
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機能・相同性 | 機能・相同性情報
thymidine phosphorylase / pyrimidine-nucleoside phosphorylase activity / thymidine metabolic process / thymidine phosphorylase activity / pyrimidine nucleobase metabolic process / 1,4-alpha-oligoglucan phosphorylase activity / AMP catabolic process / cytosol類似検索 - 分子機能 Thymidine phosphorylase / Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic / Pyrimidine nucleoside phosphorylase-like, C-terminal domain / Thymidine/pyrimidine-nucleoside phosphorylase / Pyrimidine nucleoside phosphorylase, C-terminal / Pyrimidine-nucleoside phosphorylase, conserved site / Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily / Pyrimidine nucleoside phosphorylase C-terminal domain / Thymidine and pyrimidine-nucleoside phosphorylases signature. / Pyrimidine nucleoside phosphorylase C-terminal domain ...Thymidine phosphorylase / Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic / Pyrimidine nucleoside phosphorylase-like, C-terminal domain / Thymidine/pyrimidine-nucleoside phosphorylase / Pyrimidine nucleoside phosphorylase, C-terminal / Pyrimidine-nucleoside phosphorylase, conserved site / Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily / Pyrimidine nucleoside phosphorylase C-terminal domain / Thymidine and pyrimidine-nucleoside phosphorylases signature. / Pyrimidine nucleoside phosphorylase C-terminal domain / Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C / Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 / Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain / Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 / Glycosyl transferase family 3, N-terminal domain / Glycosyl transferase family 3, N-terminal domain superfamily / Glycosyl transferase family, helical bundle domain / Glycosyl transferase, family 3 / Glycosyl transferase family, a/b domain / Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily / Aldehyde Oxidoreductase; domain 3 / Alpha-Beta Complex / Up-down Bundle / 3-Layer(aba) Sandwich / Mainly Alpha / Alpha Beta類似検索 - ドメイン・相同性 TRIETHYLENE GLYCOL / THYMIDINE / Thymidine phosphorylase類似検索 - 構成要素 |
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生物種 | Salmonella enterica subsp. enterica serovar Typhimurium (サルモネラ菌) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.55 Å |
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データ登録者 | Balaev, V.V. / Lashkov, A.A. / Gabdulkhakov, A.G. / Betzel, C. / Mikhailov, A.M. |
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資金援助 | ロシア, 1件 組織 | 認可番号 | 国 |
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Russian Foundation for Basic Research | 14-04-00952 | ロシア |
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引用 | ジャーナル: Acta Crystallogr.,Sect.F / 年: 2016 タイトル: Structural investigation of the thymidine phosphorylase from Salmonella typhimurium in the unliganded state and its complexes with thymidine and uridine. 著者: Balaev, V.V. / Lashkov, A.A. / Gabdulkhakov, A.G. / Dontsova, M.V. / Seregina, T.A. / Mironov, A.S. / Betzel, C. / Mikhailov, A.M. |
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履歴 | 登録 | 2015年2月24日 | 登録サイト: RCSB / 処理サイト: PDBE |
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改定 1.0 | 2016年3月2日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2016年3月9日 | Group: Database references |
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改定 2.0 | 2017年9月13日 | Group: Advisory / Atomic model ...Advisory / Atomic model / Author supporting evidence / Derived calculations カテゴリ: atom_site / pdbx_audit_support ...atom_site / pdbx_audit_support / pdbx_unobs_or_zero_occ_atoms / struct_site_gen Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _pdbx_audit_support.funding_organization / _struct_site_gen.auth_seq_id |
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改定 2.1 | 2024年1月10日 | Group: Advisory / Data collection ...Advisory / Data collection / Database references / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_unobs_or_zero_occ_atoms Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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