- PDB-4s1v: Crystal structure of phosphoglycerate oxidoreductase from Vibrio ... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 4s1v
Title
Crystal structure of phosphoglycerate oxidoreductase from Vibrio Cholerae o395
Components
D-3-phosphoglycerate dehydrogenase-related protein
Keywords
OXIDOREDUCTASE / ROSSMAN FOLD
Function / homology
Function and homology information
phosphoglycerate dehydrogenase / phosphoglycerate dehydrogenase activity / oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor / NAD binding Similarity search - Function
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain / D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain / D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain / D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain / NAD(P)-binding Rossmann-like Domain / NAD(P)-binding domain superfamily / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology
D-3-phosphoglycerate dehydrogenase-related protein / D-isomerspecific 2-hydroxyacid dehydrogenase family protein Similarity search - Component
Biological species
Vibrio cholerae (bacteria)
Method
X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 2.1 Å
D: D-3-phosphoglycerate dehydrogenase-related protein A: D-3-phosphoglycerate dehydrogenase-related protein B: D-3-phosphoglycerate dehydrogenase-related protein C: D-3-phosphoglycerate dehydrogenase-related protein
Resolution: 2.1→50 Å / Cor.coef. Fo:Fc: 0.945 / Cor.coef. Fo:Fc free: 0.916 / SU B: 5.968 / SU ML: 0.159 / Cross valid method: THROUGHOUT / ESU R: 0.276 / ESU R Free: 0.206 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.243
3549
5 %
RANDOM
Rwork
0.202
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obs
0.204
66853
95.5 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK