primary follicle stage / mRNA alternative polyadenylation / dosage compensation by inactivation of X chromosome / mRNA splice site recognition / N6-methyladenosine-containing RNA reader activity / regulation of mRNA splicing, via spliceosome / post-transcriptional regulation of gene expression / regulation of alternative mRNA splicing, via spliceosome / mRNA export from nucleus / mRNA splicing, via spliceosome ...primary follicle stage / mRNA alternative polyadenylation / dosage compensation by inactivation of X chromosome / mRNA splice site recognition / N6-methyladenosine-containing RNA reader activity / regulation of mRNA splicing, via spliceosome / post-transcriptional regulation of gene expression / regulation of alternative mRNA splicing, via spliceosome / mRNA export from nucleus / mRNA splicing, via spliceosome / spermatogenesis / in utero embryonic development / nuclear speck / mRNA binding / RNA binding / nucleoplasm / nucleus / plasma membrane Similarity search - Function
ph1033 like fold / ph1033 like domains / YTH domain containing protein / YTH domain / YT521-B-like domain / YTH domain profile. / Roll / Alpha Beta Similarity search - Domain/homology
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1.5418 Å / Relative weight: 1
Reflection
Resolution: 1.8→27.31 Å / Num. obs: 28931 / % possible obs: 99.1 % / Redundancy: 3.6 % / Rmerge(I) obs: 0.086 / Net I/σ(I): 10.9
Reflection shell
Diffraction-ID: 1
Resolution (Å)
Redundancy (%)
Rmerge(I) obs
Mean I/σ(I) obs
Num. measured all
Num. unique all
Rpim(I) all
% possible all
1.8-1.84
3.3
0.901
1.7
4968
1528
0.574
90.3
9.02-27.31
3.5
0.023
45.5
836
240
0.014
95.7
-
Processing
Software
Name
Version
Classification
NB
Aimless
0.2.17
datascaling
REFMAC
refinement
PDB_EXTRACT
3.14
dataextraction
XDS
datareduction
Refinement
Method to determine structure: MIR / Resolution: 1.9→25 Å / Cor.coef. Fo:Fc: 0.955 / Cor.coef. Fo:Fc free: 0.927 / WRfactor Rfree: 0.2194 / WRfactor Rwork: 0.1733 / Occupancy max: 1 / Occupancy min: 0.4 / FOM work R set: 0.8008 / SU B: 8.794 / SU ML: 0.129 / SU R Cruickshank DPI: 0.1619 / SU Rfree: 0.1528 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.162 / ESU R Free: 0.153 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: Structure of an isomorphous crystal was solved by molecular replacement using PHASER and coordinates from PDB entry 2YUD. Phase improvement and automated model building were performed with ...Details: Structure of an isomorphous crystal was solved by molecular replacement using PHASER and coordinates from PDB entry 2YUD. Phase improvement and automated model building were performed with ARP/WARP. COOT was used for interactive model building. Model geometry was evaluated with MOLPROBITY.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.24
1007
4 %
THIN SHELLS (SFTOOLS)
Rwork
0.1909
-
-
-
obs
0.193
24951
99.63 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
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