Entry | Database: PDB / ID: 4quf |
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Title | crystal structure of chromodomain of Rhino with H3K9me3 |
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Components | - H3(1-15)K9me3 peptide
- RE36324p
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Keywords | PROTEIN BINDING / piRNA biogensis / histone binding |
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Function / homology | Function and homology information
piRNA transcription / positive regulation of piRNA transcription / Rhino-Deadlock-Cutoff Complex / positive regulation of snRNA transcription by RNA polymerase II / chorion-containing eggshell pattern formation / piRNA processing / chromosome organization / heterochromatin / pericentric heterochromatin / methylated histone binding ...piRNA transcription / positive regulation of piRNA transcription / Rhino-Deadlock-Cutoff Complex / positive regulation of snRNA transcription by RNA polymerase II / chorion-containing eggshell pattern formation / piRNA processing / chromosome organization / heterochromatin / pericentric heterochromatin / methylated histone binding / transcription antitermination / heterochromatin formation / chromatin binding / chromatin / positive regulation of transcription by RNA polymerase II / nucleusSimilarity search - Function : / : / Chromo domain / Chromo (CHRromatin Organisation MOdifier) domain / Chromo and chromo shadow domain profile. / OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #40 / Chromo/chromo shadow domain / Chromatin organization modifier domain / Chromo-like domain superfamily / OB fold (Dihydrolipoamide Acetyltransferase, E2P) ...: / : / Chromo domain / Chromo (CHRromatin Organisation MOdifier) domain / Chromo and chromo shadow domain profile. / OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #40 / Chromo/chromo shadow domain / Chromatin organization modifier domain / Chromo-like domain superfamily / OB fold (Dihydrolipoamide Acetyltransferase, E2P) / Beta Barrel / Mainly BetaSimilarity search - Domain/homology |
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Biological species | ![](img/tx_arthropod.gif) Drosophila melanogaster (fruit fly) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.501 Å |
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Authors | Li, S. / Patel, D.J. |
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Citation | Journal: Genes Dev. / Year: 2014 Title: Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing. Authors: Le Thomas, A. / Stuwe, E. / Li, S. / Du, J. / Marinov, G. / Rozhkov, N. / Chen, Y.C. / Luo, Y. / Sachidanandam, R. / Toth, K.F. / Patel, D. / Aravin, A.A. |
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History | Deposition | Jul 10, 2014 | Deposition site: RCSB / Processing site: RCSB |
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Revision 1.0 | Aug 20, 2014 | Provider: repository / Type: Initial release |
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Revision 1.1 | Sep 20, 2023 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_conn / struct_ref_seq_dif Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_ref_seq_dif.details |
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