- PDB-4mn0: Spatial structure of the novel light-sensitive photoprotein berov... -
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Basic information
Entry
Database: PDB / ID: 4mn0
Title
Spatial structure of the novel light-sensitive photoprotein berovin from the ctenophore Beroe abyssicola in the Ca2+-loaded apoprotein conformation state
Components
Berovin
Keywords
LUMINESCENT PROTEIN / Ca2+-regulated photoprotein / Coelenterazine / Berovin / Bioluminescent protein / Structural Genomics / PSI / Protein Structure Initiative / Southeast Collaboratory for Structural Genomics / SECSG / EF-hand Ca2+-binding protein / Ca2+-regulated bioluminescent protein / Coelenterazine BindingCalcium Binding
Resolution: 2→2.05 Å / Num. unique all: 833 / Rsym value: 0.41 / % possible all: 82.84
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Processing
Software
Name
Version
Classification
SERGUI
GUI
datacollection
PHASER
phasing
REFMAC
5.6.0117
refinement
HKL-2000
datareduction
SCALEPACK
datascaling
Refinement
Method to determine structure: SAD / Resolution: 1.9→40.78 Å / Cor.coef. Fo:Fc: 0.947 / Cor.coef. Fo:Fc free: 0.918 / SU B: 3.94 / SU ML: 0.117 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.177 / ESU R Free: 0.172 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.25554
801
5.1 %
RANDOM
Rwork
0.19285
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all
0.20192
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obs
0.19616
14867
91.9 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK