登録情報 | データベース: PDB / ID: 4l9o |
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タイトル | Crystal Structure of the Sec13-Sec16 blade-inserted complex from Pichia pastoris |
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要素 | Sec16,Protein transport protein SEC13 |
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キーワード | PROTEIN TRANSPORT / Beta propeller / COPII / Vesicle coat budding / Nuclear Pore Complex Proteins / COP-coated Vesicles / Endoplasmic Reticulum / ACE1 |
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機能・相同性 | 機能・相同性情報
nuclear pore localization => GO:0051664 / : / Seh1-associated complex / COPII-coated vesicle budding / nuclear pore outer ring / COPII vesicle coat / COPII vesicle coating / mRNA transport / positive regulation of TORC1 signaling / positive regulation of GTPase activity ...nuclear pore localization => GO:0051664 / : / Seh1-associated complex / COPII-coated vesicle budding / nuclear pore outer ring / COPII vesicle coat / COPII vesicle coating / mRNA transport / positive regulation of TORC1 signaling / positive regulation of GTPase activity / autophagy / protein transport / Golgi membrane / endoplasmic reticulum membrane / positive regulation of DNA-templated transcription / structural molecule activity類似検索 - 分子機能 Sec16, central conserved domain / COPII coat assembly protein, Sec16 / Vesicle coat trafficking protein Sec16 mid-region / Protein Sec13 / Ancestral coatomer element 1, Sec16/Sec31 / Sec23-binding domain of Sec16 / Sec13/Seh1 family / : / YVTN repeat-like/Quinoprotein amine dehydrogenase / 7 Propeller ...Sec16, central conserved domain / COPII coat assembly protein, Sec16 / Vesicle coat trafficking protein Sec16 mid-region / Protein Sec13 / Ancestral coatomer element 1, Sec16/Sec31 / Sec23-binding domain of Sec16 / Sec13/Seh1 family / : / YVTN repeat-like/Quinoprotein amine dehydrogenase / 7 Propeller / Methylamine Dehydrogenase; Chain H / Trp-Asp (WD) repeats profile. / Trp-Asp (WD) repeats circular profile. / WD domain, G-beta repeat / WD40 repeats / WD40 repeat / WD40-repeat-containing domain superfamily / WD40/YVTN repeat-like-containing domain superfamily / Mainly Beta類似検索 - ドメイン・相同性 Protein transport protein SEC13 / Protein transport protein sec16類似検索 - 構成要素 |
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生物種 | Komagataella pastoris (菌類)
Komagataella phaffii (菌類) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 1.6 Å |
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データ登録者 | McMahon, C. / Jeffrey, P.D. / Hughson, F.M. |
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引用 | ジャーナル: Mol Biol Cell / 年: 2013 タイトル: Sec16 influences transitional ER sites by regulating rather than organizing COPII. 著者: Bharucha, N. / Liu, Y. / Papanikou, E. / McMahon, C. / Esaki, M. / Jeffrey, P.D. / Hughson, F.M. / Glick, B.S. |
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履歴 | 登録 | 2013年6月18日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2013年10月2日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2014年2月5日 | Group: Database references |
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改定 1.2 | 2017年6月21日 | Group: Database references / Source and taxonomy / Structure summary カテゴリ: entity / entity_src_gen ...entity / entity_src_gen / struct_ref / struct_ref_seq / struct_ref_seq_dif Item: _entity.pdbx_description / _entity.pdbx_fragment ..._entity.pdbx_description / _entity.pdbx_fragment / _struct_ref.db_code / _struct_ref.pdbx_align_begin / _struct_ref.pdbx_db_accession / _struct_ref.pdbx_seq_one_letter_code / _struct_ref_seq.db_align_beg / _struct_ref_seq.db_align_end / _struct_ref_seq.pdbx_auth_seq_align_beg / _struct_ref_seq.pdbx_auth_seq_align_end / _struct_ref_seq.pdbx_db_accession / _struct_ref_seq.seq_align_beg / _struct_ref_seq.seq_align_end / _struct_ref_seq_dif.details / _struct_ref_seq_dif.pdbx_seq_db_accession_code |
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改定 1.3 | 2023年9月20日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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