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Open data
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Basic information
Entry | Database: PDB / ID: 4kun | ||||||
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Title | Crystal structure of Legionella pneumophila Lpp1115 / KaiB | ||||||
![]() | Hypothetical protein Lpp1115 | ||||||
![]() | UNKNOWN FUNCTION / Midwest Center for Structural Genomics / MCSG / PSI-Biology / Alpha and beta proteins (a/b) / thioredoxin fold | ||||||
Function / homology | Glutaredoxin / Glutaredoxin / 3-Layer(aba) Sandwich / Alpha Beta / : ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Petit, P. / Stogios, P.J. / Stein, A. / Wawrzak, Z. / Skarina, T. / Daniels, C. / Di Leo, R. / Buchrieser, C. / Savchenko, A. / Joachimiak, A. / Midwest Center for Structural Genomics (MCSG) | ||||||
![]() | ![]() Title: The Legionella pneumophila kai operon is implicated in stress response and confers fitness in competitive environments. Authors: Loza-Correa, M. / Sahr, T. / Rolando, M. / Daniels, C. / Petit, P. / Skarina, T. / Gomez Valero, L. / Dervins-Ravault, D. / Honore, N. / Savchenko, A. / Buchrieser, C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 82.8 KB | Display | ![]() |
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PDB format | ![]() | 67.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 427.6 KB | Display | ![]() |
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Full document | ![]() | 429.9 KB | Display | |
Data in XML | ![]() | 10.5 KB | Display | |
Data in CIF | ![]() | 14.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 10168.762 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.01 Å3/Da / Density % sol: 38.73 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: 0.2 M sodium acetate, 0.1 M bis-Tris pH 6.5, 35% w/v PEG 8K, 1 mM zinc acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Jun 16, 2010 |
Radiation | Monochromator: Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.2828144 Å / Relative weight: 1 |
Reflection | Resolution: 1.95→29.91 Å / Num. obs: 11748 / % possible obs: 99 % / Observed criterion σ(F): 0 / Observed criterion σ(I): -2 / Redundancy: 7.3 % / Rmerge(I) obs: 0.061 / Net I/σ(I): 21.7 |
Reflection shell | Resolution: 1.95→2.06 Å / Redundancy: 7.1 % / Rmerge(I) obs: 0.484 / Mean I/σ(I) obs: 5.1 / Num. unique all: 1686 / % possible all: 97.9 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.95→27.379 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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