- PDB-4d72: Crystal structure of a family 98 glycoside hydrolase catalytic mo... -
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基本情報
登録情報
データベース: PDB / ID: 4d72
タイトル
Crystal structure of a family 98 glycoside hydrolase catalytic module (Sp3GH98) in complex with the type 2 blood group A-tetrasaccharide (E558A L19 mutant)
SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL.
BETA-D-GALACTOSE (GAL): PART OF THE A-TETRASACCHARIDE SUBSTRATE ALPHA-L-FUCOSE (FUC): PART OF THE A- ...BETA-D-GALACTOSE (GAL): PART OF THE A-TETRASACCHARIDE SUBSTRATE ALPHA-L-FUCOSE (FUC): PART OF THE A-TETRASACCHARIDE SUBSTRATE N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2G): PART OF THE A-TETRASACCHARIDE SUBSTRATE N-ACETYL-D-GLUCOSAMINE (NAG): PART OF THE A-TETRASACCHARIDE SUBSTRATE
解像度: 2.11→30.68 Å / Cor.coef. Fo:Fc: 0.949 / Cor.coef. Fo:Fc free: 0.92 / SU B: 4.061 / SU ML: 0.107 / 交差検証法: THROUGHOUT / ESU R: 0.208 / ESU R Free: 0.167 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
Rfactor
反射数
%反射
Selection details
Rfree
0.20633
2009
5 %
RANDOM
Rwork
0.16804
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obs
0.16995
38013
99.54 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK