Mass: 8201.373 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: THE FIRST RESIDUE(S) OF THE CONSTRUCT IS A CLONING ARTEFACT. THE FIRST RESIDUE OF THE MATURE PROTEIN AFTER SIGNAL PEPTIDE CLEAVAGE (A) IS MISSING. Source: (gene. exp.) NEUROSPORA CRASSA (fungus) / Strain: OR74A / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): BL21 / Variant (production host): ROSETTA-2 / References: UniProt: Q7S3P5
-
Experimental details
-
Experiment
Experiment
Method: SOLUTION NMR
NMR experiment
Conditions-ID
Experiment-ID
Solution-ID
Type
1
1
1
T2
1
2
1
T1
1
3
1
HTNOE1
1
4
1
HTNOE2
1
5
1
AROMATIC C-NOE
1
6
1
C-NOE
1
7
1
N-NOE
1
8
1
2D-NOE
1
9
1
HN-CO
1
10
1
HN(CA)CO
NMR details
Text: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED NC2.
-
Sample preparation
Details
Solution-ID
Contents
1
90% H2O/10% D2O
2
100% D2O
3
95% H2O/5% D2O
Sample conditions
Ionic strength: 20.0 mM / pH: 6.0 / Pressure: 1.0 atm / Temperature: 283.0 K
-
NMR measurement
NMR spectrometer
Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 800 MHz
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi