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- PDB-4akl: Structure of the Crimean-Congo Haemorrhagic Fever Virus Nucleocap... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4akl | ||||||
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Title | Structure of the Crimean-Congo Haemorrhagic Fever Virus Nucleocapsid Protein | ||||||
![]() | NUCLEOCAPSID | ||||||
![]() | VIRAL PROTEIN / BUNYAVIRIDAE / CCHFV / CASPASE-3 | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Carter, S.D. / Walter, C.T. / Surtees, R. / Bergeron, E. / Ariza, A. / Albarino, C.G. / Nichol, S.T. / Hiscox, J.A. / Edwards, T.A. / Barr, J.N. | ||||||
![]() | ![]() Title: Structure, Function, and Evolution of the Crimean-Congo Hemorrhagic Fever Virus Nucleocapsid Protein. Authors: Carter, S.D. / Surtees, R. / Walter, C.T. / Ariza, A. / Bergeron, E. / Nichol, S.T. / Hiscox, J.A. / Edwards, T.A. / Barr, J.N. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 396.2 KB | Display | ![]() |
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PDB format | ![]() | 328.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 448.7 KB | Display | ![]() |
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Full document | ![]() | 456.2 KB | Display | |
Data in XML | ![]() | 37 KB | Display | |
Data in CIF | ![]() | 53.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: 1 / Ens-ID: 1 / Beg auth comp-ID: MET / Beg label comp-ID: MET / End auth comp-ID: ILE / End label comp-ID: ILE / Refine code: 5 / Auth seq-ID: 1 - 482 / Label seq-ID: 1 - 482
NCS oper: (Code: given Matrix: (-0.751, -0.005975, -0.6602), Vector: |
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Components
#1: Protein | Mass: 54028.367 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.4 Å3/Da / Density % sol: 48 % Description: THE STRUCTURE WAS SOLVED FROM A LOW-RESOLUTION DATASET COLLECTED FROM A CRYSTAL CONTAINING A MERCURY DERIVATIVE. THE FINAL DATA BELONG TO A NATIVE CRYSTAL THAT DIFFRACTED TO HIGHER RESOLUTION. |
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Crystal grow | pH: 6.5 Details: 0.1 M BIS-TRIS PROPANE PH 6.5, 0.2 M NACL, 25% PEG 600 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 2M / Detector: PIXEL / Date: Oct 25, 2011 / Details: TOROIDAL MIRROR |
Radiation | Monochromator: SINGLE BOUNCE MONOCHROMATOR / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9173 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→48.79 Å / Num. obs: 56441 / % possible obs: 95.5 % / Observed criterion σ(I): 3 / Redundancy: 3.3 % / Rmerge(I) obs: 0.04 / Net I/σ(I): 13.9 |
Reflection shell | Resolution: 2.1→2.21 Å / Redundancy: 3.3 % / Rmerge(I) obs: 0.47 / Mean I/σ(I) obs: 2.5 / % possible all: 97.2 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: NONE Resolution: 2.1→94.7 Å / Cor.coef. Fo:Fc: 0.961 / Cor.coef. Fo:Fc free: 0.936 / SU B: 11.547 / SU ML: 0.139 / Cross valid method: THROUGHOUT / ESU R: 0.243 / ESU R Free: 0.196 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 38.219 Å2
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Refinement step | Cycle: LAST / Resolution: 2.1→94.7 Å
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Refine LS restraints |
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