Mass: 60984.379 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Drosophila melanogaster (fruit fly) / Gene: atl, CG6668 / Production host: Escherichia coli (E. coli) References: UniProt: Q9VC57, Hydrolases; Acting on acid anhydrides; Acting on GTP to facilitate cellular and subcellular movement
Method to determine structure: MOLECULAR REPLACEMENT Starting model: Atlastin of human Resolution: 2.87→27.793 Å / SU ML: 0.61 / σ(F): 1.33 / Phase error: 45.75 / Stereochemistry target values: ML
Rfactor
Num. reflection
% reflection
Rfree
0.3785
494
4.85 %
Rwork
0.2733
-
-
all
0.3785
-
-
obs
0.2783
10185
91.98 %
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Refinement step
Cycle: LAST / Resolution: 2.87→27.793 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
2982
0
29
6
3017
Refine LS restraints
Refine-ID
Type
Dev ideal
Number
X-RAY DIFFRACTION
f_bond_d
0.009
3073
X-RAY DIFFRACTION
f_angle_d
1.639
4161
X-RAY DIFFRACTION
f_dihedral_angle_d
20.915
1118
X-RAY DIFFRACTION
f_chiral_restr
0.105
463
X-RAY DIFFRACTION
f_plane_restr
0.008
533
LS refinement shell
Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 4
Resolution (Å)
Rfactor Rfree
Num. reflection Rfree
Rfactor Rwork
Num. reflection Rwork
% reflection obs (%)
2.87-3.1565
0.4613
120
0.3174
2328
90
3.1565-3.6124
0.4063
133
0.2973
2558
98
3.6124-4.548
0.3939
111
0.2612
2221
84
4.548-27.7946
0.3364
130
0.2613
2584
96
+
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