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- PDB-3vg8: Crystal structure of hypothetical protein TTHB210 from Thermus th... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3vg8 | ||||||
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Title | Crystal structure of hypothetical protein TTHB210 from Thermus thermophilus HB8 | ||||||
![]() | Hypothetical Protein TTHB210 | ||||||
![]() | UNKNOWN FUNCTION / Alpha and beta proteins (a+b) | ||||||
Function / homology | Phosphorylase Kinase; domain 1 - #270 / Uncharacterized protein TTHB210-like / Phosphorylase Kinase; domain 1 / 2-Layer Sandwich / Alpha Beta / Uncharacterized protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Agari, Y. / Sakamoto, K. / Agari, K. / Kuramitsu, S. / Shinkai, A. | ||||||
![]() | ![]() Title: Crystal structure of hypothetical protein TTHB210, controlled by the [sigma]E/anti-[sigma]E regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer Authors: Agari, Y. / Kuramitsu, S. / Shinkai, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 221.3 KB | Display | ![]() |
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PDB format | ![]() | 186.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 497 KB | Display | ![]() |
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Full document | ![]() | 517.1 KB | Display | |
Data in XML | ![]() | 45.2 KB | Display | |
Data in CIF | ![]() | 63.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 12914.449 Da / Num. of mol.: 10 / Mutation: L81M Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal |
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Crystal grow |
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-Data collection
Diffraction |
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Diffraction source |
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Detector |
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Radiation |
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Radiation wavelength |
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Reflection | Resolution: 2.2→50 Å / Num. obs: 61889 / % possible obs: 99.4 % / Redundancy: 5.2 % / Biso Wilson estimate: 22.1 Å2 / Rmerge(I) obs: 0.061 / Net I/σ(I): 40.2 | ||||||||||||||||||
Reflection shell | Redundancy: 4.8 % / Rmerge(I) obs: 0.272 / Mean I/σ(I) obs: 5.35 / Num. unique all: 5576 / % possible all: 97 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 69.2475 Å2 / ksol: 0.38 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 40.2 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.2→46.11 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.2→2.34 Å / Rfactor Rfree error: 0.009 / Total num. of bins used: 6
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Xplor file |
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