登録情報 データベース : PDB / ID : 3v8v 構造の表示 ダウンロードとリンクタイトル Crystal structure of bifunctional methyltransferase YcbY (RlmLK) from Escherichia coli, SAM binding 要素Ribosomal RNA large subunit methyltransferase L 詳細 キーワード TRANSFERASE / YcbY / RNA methyltransferase / ribosome RNA / SAH / RlmKL / RlmL機能・相同性 機能・相同性情報分子機能 ドメイン・相同性 構成要素
23S rRNA (guanine2445-N2)-methyltransferase / 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine(2445)-N(2))-methyltransferase activity / rRNA (guanine-N2-)-methyltransferase activity / rRNA (guanine-N7-)-methyltransferase activity / rRNA base methylation / rRNA methylation / RNA binding / cytoplasm 類似検索 - 分子機能 Ribosomal RNA large subunit methyltransferase K/L / Uncharacterized protein family UPF0020 signature. / RNA methyltransferase domain (HRMD) like / S-adenosylmethionine-dependent methyltransferase / S-adenosylmethionine-dependent methyltransferase / VC0802-like - #30 / Ribosomal RNA large subunit methyltransferase K/L-like, FLD domain / RMKL-like, methyltransferase domain / THUMP / THUMP domain ... Ribosomal RNA large subunit methyltransferase K/L / Uncharacterized protein family UPF0020 signature. / RNA methyltransferase domain (HRMD) like / S-adenosylmethionine-dependent methyltransferase / S-adenosylmethionine-dependent methyltransferase / VC0802-like - #30 / Ribosomal RNA large subunit methyltransferase K/L-like, FLD domain / RMKL-like, methyltransferase domain / THUMP / THUMP domain / THUMP domain / THUMP domain profile. / VC0802-like / Transcription Regulator spoIIAA / DNA methylase, N-6 adenine-specific, conserved site / Vaccinia Virus protein VP39 / S-adenosyl-L-methionine-dependent methyltransferase superfamily / Rossmann fold / 2-Layer Sandwich / 3-Layer(aba) Sandwich / Alpha Beta 類似検索 - ドメイン・相同性 octanoyl-sucrose, esterificated at fructose C6 / S-ADENOSYLMETHIONINE / Ribosomal RNA large subunit methyltransferase K/L 類似検索 - 構成要素生物種 Escherichia coli (大腸菌)手法 X線回折 / シンクロトロン / 分子置換 / 解像度 : 2.6 Å 詳細データ登録者 Su, X.D. / Wang, K.T. 引用ジャーナル : Nucleic Acids Res. / 年 : 2012タイトル : Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA著者 : Wang, K.T. / Desmolaize, B. / Nan, J. / Zhang, X.W. / Li, L.F. / Douthwaite, S. / Su, X.D. 履歴 登録 2011年12月23日 登録サイト : RCSB / 処理サイト : PDBJ改定 1.0 2012年2月29日 Provider : repository / タイプ : Initial release改定 1.1 2013年6月26日 Group : Database references改定 2.0 2020年7月29日 Group : Advisory / Atomic model ... Advisory / Atomic model / Data collection / Derived calculations / Non-polymer description / Structure summary カテゴリ : atom_site / chem_comp ... atom_site / chem_comp / entity / entity_name_com / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_molecule_features / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_unobs_or_zero_occ_atoms / pdbx_validate_close_contact / struct_asym / struct_conn / struct_site / struct_site_gen Item : _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ... _atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _chem_comp.formula / _chem_comp.formula_weight / _chem_comp.id / _chem_comp.mon_nstd_flag / _chem_comp.name / _chem_comp.pdbx_synonyms / _chem_comp.type / _entity.formula_weight / _entity.pdbx_description / _entity.pdbx_number_of_molecules / _entity.src_method / _entity.type / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_unobs_or_zero_occ_atoms.auth_asym_id / _pdbx_unobs_or_zero_occ_atoms.auth_atom_id / _pdbx_unobs_or_zero_occ_atoms.auth_comp_id / _pdbx_unobs_or_zero_occ_atoms.auth_seq_id / _pdbx_unobs_or_zero_occ_atoms.label_asym_id / _pdbx_unobs_or_zero_occ_atoms.label_atom_id / _pdbx_unobs_or_zero_occ_atoms.label_comp_id / _pdbx_unobs_or_zero_occ_atoms.label_seq_id / _struct_asym.entity_id 解説 : Carbohydrate remediation / Provider : repository / タイプ : Remediation改定 2.1 2023年11月8日 Group : Data collection / Database references ... Data collection / Database references / Refinement description / Structure summary カテゴリ : chem_comp / chem_comp_atom ... chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item : _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession
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