[English] 日本語
Yorodumi
- PDB-3v5i: The crystal structure of the mutant ClpP S98A (Staphylococcus aureus) -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 3v5i
TitleThe crystal structure of the mutant ClpP S98A (Staphylococcus aureus)
ComponentsATP-dependent Clp protease proteolytic subunit
KeywordsHYDROLASE / whole proteome
Function / homology
Function and homology information


endopeptidase Clp / endopeptidase Clp complex / ATP-dependent peptidase activity / protein quality control for misfolded or incompletely synthesized proteins / ATPase binding / serine-type endopeptidase activity / cytoplasm
Similarity search - Function
ClpP, Ser active site / Endopeptidase Clp serine active site. / ClpP, histidine active site / Endopeptidase Clp histidine active site. / ATP-dependent Clp protease proteolytic subunit / Clp protease proteolytic subunit /Translocation-enhancing protein TepA / Clp protease / 2-enoyl-CoA Hydratase; Chain A, domain 1 / 2-enoyl-CoA Hydratase; Chain A, domain 1 / ClpP/crotonase-like domain superfamily ...ClpP, Ser active site / Endopeptidase Clp serine active site. / ClpP, histidine active site / Endopeptidase Clp histidine active site. / ATP-dependent Clp protease proteolytic subunit / Clp protease proteolytic subunit /Translocation-enhancing protein TepA / Clp protease / 2-enoyl-CoA Hydratase; Chain A, domain 1 / 2-enoyl-CoA Hydratase; Chain A, domain 1 / ClpP/crotonase-like domain superfamily / Alpha-Beta Complex / Alpha Beta
Similarity search - Domain/homology
ATP-dependent Clp protease proteolytic subunit
Similarity search - Component
Biological speciesStaphylococcus aureus subsp. aureus (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.8 Å
AuthorsList, A. / Gersch, M. / Groll, M. / Sieber, S.
CitationJournal: J.Biol.Chem. / Year: 2012
Title: Insights into structural network responsible for oligomerization and activity of bacterial virulence regulator caseinolytic protease P (ClpP) protein.
Authors: Gersch, M. / List, A. / Groll, M. / Sieber, S.A.
History
DepositionDec 16, 2011Deposition site: RCSB / Processing site: RCSB
Revision 1.0Feb 8, 2012Provider: repository / Type: Initial release
Revision 1.1Jul 11, 2012Group: Database references
Revision 1.2Nov 8, 2017Group: Refinement description / Category: software / Item: _software.name
Revision 1.3Sep 13, 2023Group: Data collection / Database references / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_ref_seq_dif
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ref_seq_dif.details

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
A: ATP-dependent Clp protease proteolytic subunit
B: ATP-dependent Clp protease proteolytic subunit
C: ATP-dependent Clp protease proteolytic subunit
D: ATP-dependent Clp protease proteolytic subunit
E: ATP-dependent Clp protease proteolytic subunit
F: ATP-dependent Clp protease proteolytic subunit
G: ATP-dependent Clp protease proteolytic subunit
H: ATP-dependent Clp protease proteolytic subunit
I: ATP-dependent Clp protease proteolytic subunit
J: ATP-dependent Clp protease proteolytic subunit
K: ATP-dependent Clp protease proteolytic subunit
L: ATP-dependent Clp protease proteolytic subunit
M: ATP-dependent Clp protease proteolytic subunit
N: ATP-dependent Clp protease proteolytic subunit
O: ATP-dependent Clp protease proteolytic subunit
P: ATP-dependent Clp protease proteolytic subunit
Q: ATP-dependent Clp protease proteolytic subunit
R: ATP-dependent Clp protease proteolytic subunit
S: ATP-dependent Clp protease proteolytic subunit
T: ATP-dependent Clp protease proteolytic subunit
U: ATP-dependent Clp protease proteolytic subunit
V: ATP-dependent Clp protease proteolytic subunit
W: ATP-dependent Clp protease proteolytic subunit
X: ATP-dependent Clp protease proteolytic subunit
Y: ATP-dependent Clp protease proteolytic subunit
Z: ATP-dependent Clp protease proteolytic subunit
a: ATP-dependent Clp protease proteolytic subunit
b: ATP-dependent Clp protease proteolytic subunit


Theoretical massNumber of molelcules
Total (without water)631,75528
Polymers631,75528
Non-polymers00
Water12,196677
1
A: ATP-dependent Clp protease proteolytic subunit
B: ATP-dependent Clp protease proteolytic subunit
C: ATP-dependent Clp protease proteolytic subunit
D: ATP-dependent Clp protease proteolytic subunit
E: ATP-dependent Clp protease proteolytic subunit
F: ATP-dependent Clp protease proteolytic subunit
G: ATP-dependent Clp protease proteolytic subunit
H: ATP-dependent Clp protease proteolytic subunit
I: ATP-dependent Clp protease proteolytic subunit
J: ATP-dependent Clp protease proteolytic subunit
K: ATP-dependent Clp protease proteolytic subunit
L: ATP-dependent Clp protease proteolytic subunit
M: ATP-dependent Clp protease proteolytic subunit
N: ATP-dependent Clp protease proteolytic subunit


Theoretical massNumber of molelcules
Total (without water)315,87814
Polymers315,87814
Non-polymers00
Water25214
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area56200 Å2
ΔGint-203 kcal/mol
Surface area91020 Å2
MethodPISA
2
O: ATP-dependent Clp protease proteolytic subunit
P: ATP-dependent Clp protease proteolytic subunit
Q: ATP-dependent Clp protease proteolytic subunit
R: ATP-dependent Clp protease proteolytic subunit
S: ATP-dependent Clp protease proteolytic subunit
T: ATP-dependent Clp protease proteolytic subunit
U: ATP-dependent Clp protease proteolytic subunit
V: ATP-dependent Clp protease proteolytic subunit
W: ATP-dependent Clp protease proteolytic subunit
X: ATP-dependent Clp protease proteolytic subunit
Y: ATP-dependent Clp protease proteolytic subunit
Z: ATP-dependent Clp protease proteolytic subunit
a: ATP-dependent Clp protease proteolytic subunit
b: ATP-dependent Clp protease proteolytic subunit


Theoretical massNumber of molelcules
Total (without water)315,87814
Polymers315,87814
Non-polymers00
Water25214
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area56290 Å2
ΔGint-204 kcal/mol
Surface area90990 Å2
MethodPISA
Unit cell
Length a, b, c (Å)97.550, 109.730, 171.410
Angle α, β, γ (deg.)73.10, 78.68, 71.46
Int Tables number1
Space group name H-MP1
Noncrystallographic symmetry (NCS)NCS oper:
IDCodeMatrixVector
1given(1), (1), (1)
2given(0.61284, -0.278482, 0.73951), (0.239231, 0.957311, 0.162248), (-0.753124, 0.077482, 0.6533)14.22802, 12.16527, -32.80698
3given(-0.229332, -0.385553, 0.893732), (0.253107, 0.862994, 0.43724), (-0.939864, 0.326482, -0.100326)-4.793, 21.99991, -63.67568
4given(-0.894401, -0.238647, 0.378277), (0.047437, 0.79037, 0.61079), (-0.444742, 0.564236, -0.695588)-41.65689, 21.89986, -69.39188
5given(-0.892843, 0.055409, -0.446946), (-0.233287, 0.791987, 0.564211), (0.385238, 0.608019, -0.694194)-68.60879, 12.12808, -45.16394
6given(-0.197812, 0.257766, -0.945742), (-0.38596, 0.866389, 0.316866), (0.901058, 0.427699, -0.071895)-64.7825, -0.7409, -9.82493
7given(0.631455, 0.231255, -0.740126), (-0.2699, 0.960355, 0.069795), (0.726924, 0.155687, 0.668837)-34.80478, -5.32518, 9.45954
8given(0.694918, -0.151567, 0.702934), (-0.148197, -0.986736, -0.066254), (0.703652, -0.058131, -0.708163)14.73225, 3.57076, -33.04937
9given(0.988304, 0.137923, -0.065049), (0.137838, -0.990438, -0.005824), (-0.06523, -0.00321, -0.997865)-2.20293, 13.77246, -64.96279
10given(0.547341, 0.355716, -0.757551), (0.354705, -0.918456, -0.174992), (-0.758025, -0.172926, -0.628883)-38.76703, 14.38516, -72.65258
11given(-0.314699, 0.342526, -0.885235), (0.347366, -0.826365, -0.443235), (-0.883347, -0.446986, 0.141074)-67.24151, 5.09557, -50.14194
12given(-0.941938, 0.118455, -0.314198), (0.108638, -0.77788, -0.618951), (-0.317726, -0.617147, 0.719847)-65.68723, -7.62028, -14.83545
13given(-0.859687, -0.157411, 0.485964), (-0.163248, -0.816788, -0.553361), (0.484034, -0.555049, 0.676485)-37.36406, -12.89384, 6.20315
14given(-0.139601, -0.283156, 0.94886), (-0.279438, -0.90803, -0.312084), (0.949961, -0.308714, 0.047637)-1.55738, -8.22059, -1.13756
15given(-0.205489, -0.343942, 0.91623), (-0.525158, -0.75125, -0.399791), (0.825823, -0.563319, -0.02625)70.91398, -53.72794, 48.82568
16given(0.621286, -0.421777, 0.660384), (-0.423086, -0.889932, -0.170349), (0.659547, -0.173564, -0.731351)108.55198, -15.27111, -56.91235
17given(0.986522, -0.143844, -0.077991), (-0.152735, -0.980515, -0.123539), (-0.058701, 0.133786, -0.98927)43.9688, 14.05837, -152.06322
18given(0.617568, 0.279246, -0.735276), (0.081288, -0.952505, -0.293472), (-0.782306, 0.12147, -0.610936)-73.49903, 12.04142, -164.94968
19given(-0.203148, 0.524664, -0.826716), (0.101834, -0.828421, -0.55077), (-0.973838, -0.196076, 0.114864)-155.96939, -19.79066, -86.67632
20given(-0.869789, 0.409804, -0.274822), (-0.106128, -0.69931, -0.706897), (-0.481875, -0.585685, 0.651744)-140.68433, -57.97894, 25.60225
21given(-0.866108, 0.026013, 0.499179), (-0.386712, -0.667629, -0.63618), (0.316717, -0.74404, 0.588299)-39.76838, -72.5549, 85.27555
22given(0.512633, -0.527414, 0.677526), (0.496931, 0.825755, 0.266811), (-0.70019, 0.199907, 0.685398)106.12038, 44.11281, -15.31763
23given(-0.32634, -0.41212, 0.850681), (0.487097, 0.697944, 0.524987), (-0.810086, 0.585688, -0.027025)56.7673, 76.95535, -117.80689
24given(-0.927272, -0.018289, 0.373943), (0.268643, 0.663172, 0.698594), (-0.260765, 0.748243, -0.610028)-57.25275, 80.79517, -146.82852
25given(-0.842951, 0.354214, -0.404927), (-0.000278, 0.752379, 0.65873), (0.53799, 0.55539, -0.634121)-151.4467, 52.56436, -81.1407
26given(-0.126959, 0.420715, -0.898265), (-0.116204, 0.893049, 0.434696), (0.985078, 0.15957, -0.064492)-154.03682, 13.43832, 31.272
27given(0.667954, 0.133643, -0.732104), (0.016343, 0.980872, 0.193966), (0.744023, -0.141526, 0.652993)-64.40492, -6.52636, 103.99892
28given(0.95813, -0.284952, -0.02811), (0.286269, 0.951187, 0.115299), (-0.006117, -0.118518, 0.992933)52.08113, 6.26383, 84.05774

-
Components

#1: Protein ...
ATP-dependent Clp protease proteolytic subunit / Endopeptidase Clp


Mass: 22562.680 Da / Num. of mol.: 28 / Mutation: S98A
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Staphylococcus aureus subsp. aureus (bacteria)
Strain: NCTC 8325 / Gene: clpP, SAOUHSC_00790 / Plasmid: pET301 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3) / References: UniProt: Q2G036, endopeptidase Clp
#2: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 677 / Source method: isolated from a natural source / Formula: H2O

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 2.62 Å3/Da / Density % sol: 53.01 %
Crystal growTemperature: 293 K / Method: vapor diffusion, hanging drop / pH: 7
Details: 0.18 M Magnesium acetate, 0.1 M Sodium cacodylate, 12% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: SLS / Beamline: X06SA / Wavelength: 1 Å
DetectorType: PSI PILATUS 6M / Detector: PIXEL / Date: Nov 5, 2011
RadiationMonochromator: double-crystal fixed-exit monochromator / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1 Å / Relative weight: 1
ReflectionResolution: 2.8→25 Å / Num. all: 157772 / Num. obs: 150830 / % possible obs: 95.6 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Rmerge(I) obs: 0.091 / Net I/σ(I): 5.55
Reflection shellResolution: 2.8→2.9 Å / Rmerge(I) obs: 0.393 / Mean I/σ(I) obs: 1.67 / % possible all: 96.5

-
Processing

Software
NameVersionClassification
RemDAqdata collection
REFMAC5.6.0119refinement
XDSdata reduction
XSCALEdata scaling
REFMAC5.6.0119phasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 3QWD
Resolution: 2.8→24.8 Å / Cor.coef. Fo:Fc: 0.945 / Cor.coef. Fo:Fc free: 0.93 / SU B: 32.93 / SU ML: 0.304 / Cross valid method: THROUGHOUT / ESU R Free: 0.371 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
RfactorNum. reflection% reflectionSelection details
Rfree0.24151 7542 5 %RANDOM
Rwork0.21603 ---
obs0.2173 143288 95.62 %-
all-150830 --
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
Displacement parametersBiso mean: 86.52 Å2
Baniso -1Baniso -2Baniso -3
1-4.42 Å2-1.67 Å23.05 Å2
2---1.84 Å20.41 Å2
3----2.96 Å2
Refinement stepCycle: LAST / Resolution: 2.8→24.8 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms39788 0 0 677 40465
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0120.01940292
X-RAY DIFFRACTIONr_angle_refined_deg1.3571.97454376
X-RAY DIFFRACTIONr_dihedral_angle_1_deg5.34455096
X-RAY DIFFRACTIONr_dihedral_angle_2_deg36.6825.3851820
X-RAY DIFFRACTIONr_dihedral_angle_3_deg16.237157392
X-RAY DIFFRACTIONr_dihedral_angle_4_deg12.79615224
X-RAY DIFFRACTIONr_chiral_restr0.0950.26328
X-RAY DIFFRACTIONr_gen_planes_refined0.0050.02129820
LS refinement shellResolution: 2.8→2.87 Å / Total num. of bins used: 20
RfactorNum. reflection% reflection
Rfree0.357 544 -
Rwork0.349 10337 -
obs--96.57 %
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
16.1222-17.40752.47951.1887-7.57161.2167-0.6714-0.44060.20950.5710.5998-1.43170.19570.07520.07161.28020.11590.31291.1052-0.15961.3624-30.6601-29.2103-56.2207
21.91950.5631-0.08032.8708-0.60512.3002-0.0960.226-0.1765-0.29090.1364-0.29850.1910.0814-0.04041.0072-0.04780.24170.8319-0.14370.9563-20.0001-14.3165-66.6817
35.31374.0075.05173.81883.95124.8422-0.0507-0.36530.0699-0.0398-0.0047-0.2840.0658-0.29460.05540.9872-0.07580.18530.9163-0.07220.9506-16.35596.7602-60.6799
42.50870.00831.03052.85610.25733.3036-0.12420.71270.1857-0.46540.143-0.3784-0.07780.1754-0.01881.0395-0.07880.28240.992-0.04780.9231-19.42014.1008-73.8097
534.259417.476423.554276.7815-14.219326.3648-1.52482.0895-2.2223-2.76622.3804-2.1484-0.30170.8943-0.85561.742-0.06610.4681.399-0.49971.1135-35.3323-12.4074-79.2478
628.112-5.5723-1.02391.11690.2010.0388-0.6064-2.0783-1.3760.1030.52530.11890.06290.04930.08112.76370.75540.15241.9081-0.48942.3815-20.8623-29.5837-55.8081
756.96626.3778-1.10924.6231-3.37958.41562.4503-2.2999-3.00680.6246-1.1160.27873.3908-0.1285-1.33433.0384-0.6148-0.09051.0464-0.10841.2424-15.6134-26.2472-54.9783
85.30580.10781.1844.16130.02454.2456-0.01010.077-0.3692-0.16580.0847-0.23030.25020.3646-0.07471.00580.04490.22640.8409-0.03841.1449-4.3259-23.1523-50.3617
90.5490.53950.36030.68140.63941.7451-0.18980.0632-0.1108-0.00720.1451-0.37410.09810.36320.04471.00740.07620.1540.9834-0.05531.23683.7805-5.9017-49.6927
1029.66785.23416.51782.0533.883210.36331.16462.412-2.1193-0.10261.0297-1.54730.98581.6477-2.19431.3781-0.11430.39151.2898-0.36491.62243.274-9.5777-66.1027
117.47881.64352.06860.5932-1.179415.2549-0.43340.8749-1.1867-0.37710.3411-0.0692.1167-0.34090.09231.30480.12260.1271.0303-0.10241.5104-12.2404-31.2236-44.419
121.945-4.7761-1.476813.4744.5745.9675-0.11460.0147-0.0309-0.407-0.0802-0.1827-0.2752-0.04890.19480.98620.118-0.00230.86710.02251.2381-8.4215-24.2897-31.6999
131.7829-0.0850.46281.95650.38332.7061-0.03310.1312-0.4683-0.2311-0.0449-0.66960.30230.27680.0780.9460.16690.04810.92760.00811.3466-0.668-26.3908-27.9681
141.8059-1.1427-2.29421.80292.94134.99760.08390.0077-0.1661-0.11780.0181-0.2131-0.21940.1433-0.1020.88910.1304-0.0370.96390.09481.1999-2.6217-9.5263-14.1497
152.0027-0.14210.62916.0221.5275.0866-0.07010.0791-0.226-0.46040.1205-0.37360.2150.7757-0.05030.85930.11050.01281.11790.01211.407111.2593-14.1183-25.6427
167.22851.595-6.067210.8112-1.89965.153-0.64530.2621-0.9577-1.7742-0.05580.41250.7168-0.05310.70111.3080.2907-0.11561.026-0.06221.3747-18.2665-36.5092-31.5465
172.76140.08710.31582.15931.2062.007-0.0748-0.1158-0.35520.00350.0452-0.47610.33140.31160.02970.95990.1317-0.06960.78930.08231.0565-21.922-31.3374-14.3536
188.149-4.285-0.30333.95820.22611.06930.1071-0.2995-0.19570.1294-0.004-0.24580.10590.1694-0.10310.84190.0234-0.16840.79710.03050.8718-28.103-16.8766-0.9162
197.3468-3.9019-5.504811.33094.65424.4586-0.4578-0.8342-0.0460.50710.5343-0.77510.46820.6254-0.07650.88540.0857-0.22061.06680.16051.038-12.8144-20.8093-1.1468
201.3098-5.2863.066221.4403-12.36357.17961.2970.84340.4645-2.7241-2.8654-1.49422.05781.99241.56845.44811.44771.87174.526-0.04853.0278-2.8662-34.176-11.6635
2110.5659-3.2662-3.11511.02540.97530.9325-0.37470.0661-1.03660.10580.0790.24040.13720.09350.29571.30020.10890.04760.931-0.00941.1349-32.3714-37.7993-29.8392
224.453-0.4650.11713.34921.28983.7489-0.12420.1089-0.3125-0.03330.0607-0.2570.39450.30970.06350.81110.00670.01680.67660.01680.7964-44.6463-30.2981-24.7051
231.8613-2.0644-0.163.57090.27420.5366-0.0429-0.096-0.17460.1461-0.05-0.01580.1152-0.01240.09280.805-0.0301-0.02290.69070.03960.7419-50.6715-21.5887-16.2818
243.86154.8697-2.38476.8103-5.526914.75470.0512-0.3977-0.01580.0936-0.39240.32690.4015-0.95010.34120.8555-0.04410.06180.8103-0.09510.9972-58.4042-22.653-8.6304
256.6955-2.7278-0.57411.581-0.85563.0028-0.1556-0.5023-0.55650.52890.01490.12650.61470.05260.14070.9239-0.0558-0.05660.8180.09030.7281-45.6899-25.1843-3.6068
2611.55134.7751-16.92651.9763-6.984324.8935-2.139-0.1435-1.1965-0.9351-0.0469-0.43063.15990.12632.18592.4930.3102-0.70731.6431-0.31132.092-36.6845-36.6537-37.4301
2748.9791-35.5375-9.4179108.5187-58.5553.5116-1.18432.9313-2.1559-1.8613-1.8815-1.85852.5631-0.60443.06581.20110.2654-0.27060.8988-0.42911.2983-41.1251-33.2162-38.5926
284.4007-0.95790.3424.622-0.35925.2689-0.02840.1402-0.3566-0.14370.0012-0.0980.3836-0.14750.02710.7201-0.04570.05820.7003-0.07890.8089-51.0553-27.6451-44.3251
290.6119-0.6699-0.09583.6021-1.3251.062-0.09960.1515-0.1164-0.07630.05220.0751-0.0573-0.35690.04740.7324-0.0091-0.01730.8104-0.05040.7264-59.8357-13.1231-41.4551
302.7755-0.16481.59356.5212-1.65525.0267-0.1726-0.0269-0.2855-0.19090.34680.71250.2912-0.5103-0.17420.7062-0.03220.010.9202-0.06140.8033-68.7123-16.1469-32.677
313.62021.4033-0.11862.9675-1.93035.2707-0.0811-0.1257-0.4873-0.1798-0.102-0.38720.44130.04550.18310.8332-0.00440.08660.8323-0.11610.8645-39.1215-23.7996-57.0316
322.93270.8073-0.14240.9672-1.22771.9699-0.1580.3137-0.1759-0.29010.2091-0.0950.2127-0.2412-0.05110.9234-0.04980.05660.8403-0.1030.7491-47.5812-11.9666-62.8601
335.83172.87110.08753.51241.07811.8857-0.02590.56040.0545-0.25960.1843-0.04110.025-0.1021-0.15840.9847-0.02390.01670.8943-0.01010.7108-43.49285.7468-67.9579
342.16543.6653-1.848110.10820.88835.9331-0.58360.31810.3084-1.09460.45010.9481-0.0018-0.30080.13350.89340.0083-0.12260.9479-0.03920.7666-58.4305-2.6113-61.8064
3539.33447.6409-16.479533.8671-17.956613.6559-1.29220.2337-0.3089-4.05191.51780.89972.4802-0.7794-0.22561.8278-0.364-0.31531.2074-0.27270.9952-62.9217-20.7377-59.437
360.4806-1.09811.50223.5075-4.85749.61740.07910.27930.35260.0229-0.32620.1028-1.6480.61780.24711.2312-0.02360.04210.8950.13921.382-44.371538.3673-9.3148
372.84741.18640.48594.88870.02173.6692-0.0078-0.11440.21230.16530.1106-0.0921-0.35290.0434-0.10280.7456-0.0019-0.02820.71-0.02720.6726-43.32224.79740.9906
384.6387-3.94250.81655.1013-0.56340.17090.1844-0.00090.1693-0.1168-0.0957-0.3840.08580.0115-0.08870.80150.0092-0.03770.78190.01340.7214-44.80158.1750.0614
396.67483.0579-3.4081.74920.08569.59110.5571-1.0827-0.34810.3229-0.5789-0.18920.0574-0.09660.02180.86930.0077-0.08010.91080.02860.7771-49.7427.22869.7947
407.6751-6.11151.797211.4594-1.02994.78380.0427-0.5159-0.17140.66870.00161.1804-0.371-0.2846-0.04430.8068-0.06920.0720.8566-0.03210.7593-59.140311.86110.3439
4125.61054.3598-1.21748.464-14.510326.57721.3613-1.11323.79012.1401-0.86240.7015-3.44920.734-0.49891.6427-0.20580.18051.4987-0.29121.5028-35.73639.424-6.9117
4211.18172.65532.13432.01533.48167.18890.32570.52820.4292-0.0226-0.45520.0011-0.2398-0.68430.12950.9538-0.0201-0.07050.89320.13690.7216-26.561529.265-3.2235
432.39180.675-1.121.6231-1.30322.51480.2016-0.38130.05190.3677-0.0496-0.2724-0.22540.1724-0.1520.8454-0.0184-0.13120.8199-0.03210.8042-20.885824.06075.2599
444.1579-2.8002-5.52633.07023.0997.7764-0.0999-0.0768-0.24190.0142-0.0827-0.13720.17130.24180.18260.84560.0288-0.20140.86260.07241.0392-10.62054.5679-2.4654
453.6254-0.3661.54287.5390.71624.1854-0.1433-0.4579-0.24490.71660.0937-0.0728-0.07430.25770.04960.9397-0.0706-0.1410.90150.11310.7779-22.94249.176912.8203
4617.62833.6455-5.84461.40120.25245.41660.2218-0.40770.9209-0.3014-0.21180.3093-1.1284-0.4569-0.011.21540.0442-0.17920.8789-0.07490.923-18.34139.2542-8.5947
471.9849-0.136-0.2732.5509-1.03083.29830.0034-0.14450.00250.16360.0235-0.3331-0.24520.164-0.02690.8377-0.0547-0.10.8684-0.03040.9623-3.290930.5691-12.842
481.432-0.31310.73413.25676.701315.9641-0.21040.04070.0062-0.2930.0727-0.3192-0.37090.42890.13770.91730.07580.04060.910.08691.24354.887314.8806-24.5571
493.02770.1391-1.04482.7721-2.2732.217-0.2264-0.47-0.09270.166-0.0491-0.4528-0.00010.42520.27550.84760.0064-0.13521.23120.01991.15917.028414.8638-7.8205
5011.6416-16.7596-18.461833.40147.77567.87940.7879-0.77171.31340.26981.275-1.6374-3.18510.9617-2.0631.1738-0.2498-0.24081.4069-0.29841.4863-2.610826.98066.2424
512.8713-0.9476-0.60860.74970.07197.02970.0087-0.2460.07330.1541-0.04910.0039-0.27480.00030.04040.8576-0.0882-0.04060.78350.00790.8926-14.178440.3772-27.9704
522.65320.5927-0.76920.2187-0.22991.546-0.00470.04940.1657-0.06990.0472-0.2401-0.17860.418-0.04250.9023-0.12570.0430.8229-0.04081.0077-3.632639.2956-36.5574
535.32781.99043.01592.96452.94453.20150.1090.0010.0048-0.1958-0.0425-0.1435-0.0721-0.0695-0.06660.9649-0.09860.11870.8852-0.03570.985-7.003420.8543-51.8917
5413.5533-4.3563-2.97357.16330.23999.6299-0.39630.9343-0.0497-0.22730.1186-0.5375-0.03110.63850.27770.9053-0.13150.05920.99620.01281.01976.406831.5249-49.2092
552.93711.40940.06177.11222.83878.2004-0.076-0.2170.32150.00080.0959-0.6861-0.31290.5901-0.01990.7714-0.04170.01281.03340.01451.24118.5528.5534-36.3935
5633.217210.1111-36.45273.0806-11.10240.03032.2146-3.21992.37590.454-0.36060.7242-1.86153.3805-1.8542.69910.3752-1.52271.9189-0.27283.2387-20.024545.602-26.959
5721.1941-7.30611.69582.5263-4.03546.4677-1.5306-1.77392.18320.53820.4669-0.7887-0.8451-0.89021.06371.642-0.50180.08061.18-0.26171.1311-24.001747.9463-33.4529
585.6273-2.2274-0.16972.89571.75354.4501-0.0755-0.07980.18040.06450.1419-0.0319-0.32710.0771-0.06640.9204-0.07930.0390.73110.00420.7009-28.486942.4455-44.3605
591.83351.41220.85341.48431.33981.6783-0.01510.1872-0.0661-0.2310.0248-0.0807-0.19030.0712-0.00970.9921-0.02870.0570.79430.05830.7694-28.772333.563-55.3717
604.3723-0.83680.98083.00261.57334.2977-0.33690.59270.1658-0.36640.2469-0.0379-0.33730.33510.09011.0789-0.06410.13680.85830.07260.7908-20.685935.1274-63.0215
6113.78559.75950.17257.120.10626.94420.1907-0.53460.57110.3024-0.1816-0.012-1.07920.1409-0.0091.08790.0082-0.16630.774-0.10061.0728-35.672346.5669-31.6815
624.3997-0.4092-2.199610.3676-0.22495.90280.16720.00160.325-0.11810.00230.3779-0.32980.2273-0.16950.89690.0457-0.12570.7344-0.00670.7484-48.7740.9614-36.0254
631.79682.01330.79452.6201-0.00162.702-0.15580.21630.1224-0.20290.16870.1368-0.26210.0075-0.01290.93010.0821-0.0960.7410.05880.7304-51.319934.1105-46.1384
641.16131.1242-0.95716.1785-2.92464.0873-0.10070.17360.1063-0.14920.06160.0593-0.2228-0.22050.03910.77770.0598-0.11630.88040.00760.732-60.56619.6502-48.7057
6510.64241.49450.98075.91152.57364.7203-0.46590.78230.8647-0.73670.25250.4792-0.92630.15020.21351.07050.039-0.09030.89130.1010.7171-48.204136.8023-58.3197
668.73225.3831-7.1247.4144-3.12686.240.5602-0.39841.39780.19830.693-0.075-0.60770.6669-1.25321.14030.0514-0.21310.8769-0.0891.2677-46.807442.9173-22.4936
671.82190.640.25231.9073-0.27641.4983-0.0050.04890.22380.1260.00410.2011-0.2786-0.02180.00090.83380.0918-0.03550.7349-0.01920.7288-59.235927.8981-20.049
686.6466-5.87023.117910.9388-4.15583.148-0.0054-0.33010.05820.31770.23480.3803-0.0741-0.4241-0.22940.7360.0419-0.00260.8435-0.02090.6922-65.14788.8491-16.3195
691.3042-2.0939-1.495212.5386-3.4326.1884-0.0854-0.0945-0.2515-0.52810.05691.54520.0924-0.17740.02840.80180.0928-0.16790.9015-0.06430.8866-69.818118.499-30.5144
7073.850867.4554-2.116462.4164-4.792110.31084.1330.4417.91415.0760.04468.2411-4.11830.1382-4.17762.74230.50991.4680.89070.23912.8476-68.33637.4851-34.4529
7118.59015.23480.51387.8886-6.81437.5883-0.0311-0.90880.82571.6014-0.5329-0.4408-1.7680.25830.5641.18450.09960.01671.0903-0.00511.3313-80.330375.1344-100.1164
723.99960.18550.26442.9091-0.41123.84960.11060.12540.45860.35760.18890.0627-0.487-0.0409-0.29940.80940.16150.03670.92510.08210.9681-93.506768.244-95.1818
730.82321.2203-0.31584.1757-0.70460.4716-0.02360.09880.24090.21990.26130.6737-0.068-0.4108-0.23770.75510.17660.0141.10490.13221.1354-105.466656.5999-97.8819
745.35232.912-1.01688.4561-3.5412.2753-0.18590.48430.37220.05310.31211.3115-0.1107-0.4655-0.12620.72430.2333-0.07211.33870.20951.3247-113.442558.6285-107.5117
7529.66164.788321.87880.79763.514416.1529-0.9919-0.52942.3161-0.0032-0.36850.6053-0.6673-0.29791.36041.560.14620.78391.5904-0.07642.9055-105.652477.6706-110.4796
769.20950.6074-4.9558.2266-7.74499.39120.0538-0.41171.33431.1756-0.088-0.7496-1.0990.33520.03421.15750.0866-0.09010.9627-0.0011.1241-81.309969.6164-88.887
772.79691.71460.83445.15520.31742.2342-0.0202-0.03850.35740.5380.09050.1468-0.38680.1506-0.07030.99630.14170.04190.86010.01360.7636-84.341655.3999-77.38
782.9064-2.89580.94438.8114-0.36610.60740.1161-0.0944-0.0742-0.1815-0.02930.5005-0.0413-0.3287-0.08680.82020.12990.13660.9770.07930.8935-95.374647.1943-80.883
790.90310.0835-0.5263.1790.07581.5958-0.2012-0.2665-0.05730.70730.26390.4759-0.0088-0.3118-0.06270.92130.11170.11331.01360.06530.8789-94.123734.6011-76.9029
804.5808-4.75425.48977.323-11.288719.799-0.7281-0.82740.53161.53140.76-0.0773-2.3394-0.6926-0.03191.41280.13050.67151.1321-0.18221.6803-104.480754.6074-76.468
8111.1313-5.10546.21082.4248-3.24286.29470.20830.52482.27970.0509-0.3528-0.8385-0.9125-0.22370.14451.59350.04550.19371.10440.0431.2485-70.402962.6245-80.3081
823.7923-1.7732-1.8334.61810.08915.97750.0647-0.14210.29690.33080.1745-0.0782-0.59210.3843-0.23921.0116-0.0277-0.07040.92650.00360.8227-61.728952.2016-78.3626
832.3128-1.3643-1.70821.9921.30724.18490.0253-0.25380.00360.45620.0814-0.1928-0.16730.4906-0.10670.98330.0056-0.10770.89660.04090.7222-65.350943.2438-73.7273
842.1034-0.8732-2.19223.09931.01913.85630.0404-0.1154-0.21790.3761-0.0525-0.1940.01930.28310.01210.83850.0817-0.14430.98310.06190.8158-63.470627.3486-77.689
8519.5577-21.69384.07133.27990.48473.972-1.575-2.43480.94473.15032.0847-1.22410.2984-0.3852-0.50971.4283-0.08270.15351.5032-0.29341.0221-74.005940.9843-63.7468
868.5613-3.44221.15586.1514-7.701311.15910.1871-1.2530.32321.76710.0906-0.0496-2.92440.313-0.27762.0911-0.29880.32271.5588-0.08771.2785-62.292765.4991-85.5238
875.70370.0106-0.73833.91240.01452.074-0.0533-0.44050.25760.28430.0108-0.3023-0.49670.26990.04260.9547-0.0935-0.12181.0823-0.06050.8841-49.279756.8999-91.0177
880.7036-0.1106-0.4241.8533-0.79993.3105-0.0339-0.1136-0.14210.3528-0.0702-0.4451-0.13050.52660.10410.7448-0.0325-0.14531.186-0.01310.9874-44.52843.8994-92.58
890.79660.38550.44211.90161.87132.0444-0.0703-0.1636-0.15190.13830.1515-0.4224-0.04540.4539-0.08120.7596-0.0022-0.15361.2920.08411.1873-39.563633.4041-97.9303
900.7286-3.5512.938248.468829.113974.0870.0948-0.1381-0.27640.91685.3541-0.68690.4326.2804-5.44881.10630.1466-0.57552.6472-0.482.1785-45.433344.3961-73.2356
910.37081.38021.942147.892210.56510.626-0.29130.0440.06630.66680.36140.6349-1.6390.266-0.07011.1826-0.04910.10071.3201-0.06221.3118-56.391668.0523-94.6477
924.11040.11720.80055.5125-3.37824.24630.149-0.1564-0.01830.27170.0161-0.3101-0.0941-0.0606-0.16510.7555-0.01660.0160.9619-0.02690.9583-52.163162.6621-108.2902
933.1507-1.2336-0.2791.0690.75783.77240.0679-0.04620.35930.10650.0177-0.1827-0.50070.4306-0.08560.7941-0.12370.00471.0089-0.07160.9088-45.795664.3695-114.316
943.1390.67943.63581.34671.28635.60330.019-0.2680.0731-0.1308-0.0674-0.10580.12780.01860.04840.7393-0.02440.01221.0276-0.06280.9089-46.940550.3145-124.8147
951.6352-0.39031.10263.05770.61954.17550.0565-0.1062-0.00430.0103-0.0546-0.4627-0.04140.7381-0.00190.7229-0.04350.03021.2051-0.02281.0727-35.612750.0869-120.5167
964.4178-3.75834.78710.4133-3.80375.2805-0.3181-0.8760.39461.75290.0853-0.3426-0.3712-0.71590.23281.1677-0.12040.22391.3431-0.22641.2028-59.810474.3823-108.8773
972.3476-1.96480.25632.89592.13264.8661-0.09440.03630.23620.1110.10530.0765-0.29070.1412-0.01090.88590.00470.11530.92190.03180.9808-67.995972.3523-123.1467
983.17452.45980.59545.5792-0.10374.1590.15480.19610.3981-0.3426-0.0422-0.0317-0.45260.0394-0.11260.8789-0.02220.07350.9432-0.03030.8686-61.97872.9264-130.1158
996.12332.80150.25021.51610.53061.2313-0.01730.2069-0.175-0.20560.14650.1139-0.0586-0.0891-0.12930.978-0.0006-0.06421.01070.04460.9328-72.755160.4991-138.3237
1003.6923-0.3981.91334.6707-1.35135.48560.030.430.2606-0.47040.187-0.1316-0.36390.389-0.2170.870.0010.11980.99780.01070.8407-57.176864.7349-140.1028
10120.0433-2.2543.55282.6543-2.44052.378-0.0604-1.29751.11971.1666-0.2331-0.3244-1.00460.17710.29351.22460.01020.09381.12620.01561.1816-73.315677.9349-108.7095
1021.33060.6367-0.30862.06390.57634.26080.02810.03930.2748-0.23040.14020.2248-0.5083-0.103-0.16830.85690.146-0.03290.97430.13981.0125-88.661874.1069-117.9021
10312.646216.508-9.151321.6295-11.94356.6289-0.21460.0939-0.1189-0.48020.11920.01190.1656-0.15560.09530.9310.0381-0.17261.3090.15851.0449-98.29753.4234-124.2559
1041.834-2.54830.96688.2271-1.29690.51340.04640.02980.09160.1579-0.06460.4617-0.0058-0.02680.01820.9740.1086-0.12541.26980.24011.1974-102.583364.0927-128.9125
1059.10380.83660.14076.5693-4.81113.715-0.39240.43110.7182-0.54240.74720.66060.0806-0.2387-0.35471.309-0.0497-0.0841.32640.18730.9861-86.7674.4175-135.0377
10632.7372-0.45519.87541.57333.237510.40040.69750.6561-2.55760.3612-0.57110.50631.1231-1.0524-0.12641.3405-0.1452-0.01850.99740.00241.2394-75.33743.9619-140.2295
1071.75110.52180.30834.69271.00733.4161-0.15440.0408-0.2143-0.30420.1685-0.00830.3534-0.0481-0.01420.9683-0.01950.0960.9013-0.09680.8579-59.49037.0508-134.1844
1081.55160.43251.42260.21620.68483.8599-0.21770.0240.1133-0.26040.1043-0.12960.01020.2850.11341.0984-0.05660.22480.9553-0.06420.9706-52.602514.3851-138.3954
1091.7542-0.1293-2.38421.21493.105510.8645-0.161-0.0537-0.169-0.13590.0218-0.26910.17750.36410.13910.85530.11680.08031.0168-0.04561.1215-42.534620.7206-123.4916
1106.2561-1.33512.78762.72930.40844.8572-0.25790.3841-0.1335-0.48340.2698-0.26310.29540.4282-0.01191.0754-0.08420.21740.9832-0.020.9109-47.88222.7491-143.4529
1117.7333-1.9033-0.11621.63063.268210.4516-0.2369-0.429-1.47640.18630.09310.60561.0714-1.14120.14381.6054-0.25050.0261.26810.01971.4182-73.0461-1.9827-131.7838
1123.2194-1.30021.64055.5598-0.24373.462-0.11810.0836-0.1576-0.40910.1206-0.29620.81540.1534-0.00251.07060.01110.16410.981-0.05740.9855-65.2165-3.9703-117.8913
1132.5132-0.3306-1.01230.50690.77234.4896-0.2159-0.0695-0.1826-0.10540.1032-0.18880.28540.24130.11270.86290.12080.07810.90580.00521.0121-55.43012.9188-110.9929
1140.7998-1.1978-0.62723.21581.72072.8078-0.2953-0.1474-0.38510.21540.0362-0.29280.51250.61010.25920.88190.24160.04211.07490.08471.1791-49.38548.4691-101.0818
11574.864516.830839.59523.8219.603234.54561.28062.35831.87720.58580.50180.24855.66563.1361-1.78243.98051.0188-1.26361.0881-0.49712.432-44.6686-1.7912-126.3352
11652.803337.101120.032827.075917.139720.3286-0.33221.1482-1.4711-0.19030.0415-0.30451.0229-1.13750.29081.5936-0.0627-0.06261.481-0.36071.6103-78.015-6.2366-123.1221
1175.4219-0.4811-3.17052.6265-1.65594.4582-0.48680.2757-0.4254-0.23110.20550.11170.6765-0.17210.28130.9618-0.05050.03620.9582-0.03640.9756-82.9819-4.1637-107.9823
1180.9093-0.8363-0.22842.8935-0.14032.2753-0.1125-0.039-0.45540.2220.00920.01060.5332-0.07190.10331.00060.05550.08280.88230.01990.9665-78.1431-3.4908-97.2023
1195.3138-5.1474-0.15278.43061.42782.1561-0.0660.05820.0136-0.0646-0.08540.15570.0577-0.09990.15140.86540.04070.02730.88080.0330.8477-83.840116.4873-86.2386
1204.22710.424-0.81132.2311-0.53313.9108-0.1823-0.1649-0.55220.41670.1438-0.15710.74220.2790.03851.0160.1152-0.02530.96140.11580.9523-71.780.0193-85.9542
1216.2468-2.27152.92651.0788-1.3111.63070.2610.5714-0.4323-0.8399-0.04430.24730.8562-0.0662-0.21672.2293-0.4052-0.01161.656-0.27341.4163-88.3722-4.8487-118.616
1224.5269-1.00411.96761.1842-0.63123.8935-0.08220.0073-0.4042-0.19060.24530.28040.4406-0.0783-0.16311.0182-0.15550.07891.0932-0.04651.0909-101.27431.6772-111.7176
1231.2077-1.02530.16673.4592-1.19530.4975-0.22060.0286-0.2145-0.08480.26260.45130.2347-0.2489-0.0420.9083-0.1830.11721.15230.02191.0593-103.64016.0823-101.0004
1240.4156-1.790.446812.1442-3.91083.8509-0.21090.13890.19120.23580.17680.4350.0486-0.31410.03410.6826-0.058-0.0271.16740.07121.0964-107.701425.2902-97.8549
1255.6033-1.04850.1941.260.07763.197-0.2129-0.1212-0.57160.23570.25810.72740.6711-0.3323-0.04520.87-0.0480.14481.11830.10341.0929-103.72559.0388-87.7957
12623.8371-9.962.38614.1732-1.02340.33261.65470.2953-2.9199-1.1142-0.70321.21470.5996-0.3325-0.95152.5482-0.6128-0.01192.4165-0.08751.825-96.4871-0.5617-121.3645
1274.1953-0.86025.37660.3707-1.11637.10670.60650.3399-0.8195-0.14210.2277-0.11231.44160.2272-0.83421.9911-0.67310.26351.3707-0.20931.607-102.68593.1099-125.6188
1280.1019-0.4946-0.23413.79452.32363.4928-0.09740.1044-0.0874-0.2551-0.00990.39250.4998-0.2370.10731.015-0.2503-0.14821.37080.06591.1948-107.799316.9723-127.8546
1290.47610.685-0.39173.6435-0.87770.4215-0.24910.15270.0171-0.2430.26170.47270.1342-0.3853-0.01260.848-0.127-0.16711.42360.13361.307-115.337829.1139-120.4479
13090.8943-35.3892-66.831115.861724.845349.80122.1762-2.15393.3306-2.31780.63780.1842-0.32161.962-2.8142.2506-0.9976-1.80692.72950.75083.8826-120.91969.1946-110.7556
1318.88264.45972.534638.4537-1.43380.93670.43070.175-1.2078-1.1393-0.0160.33390.34440.0744-0.41471.5524-0.41280.00171.4798-0.01191.2334-97.10816.0871-133.807
1323.4781-2.52662.16382.2506-2.28625.2053-0.17140.2731-0.009-0.01030.14680.54680.868-0.51310.02461.1531-0.3246-0.07671.26530.04621.2349-95.559316.7904-144.885
1332.89132.60810.5522.60690.76771.3613-0.16960.46330.134-0.22220.14630.45470.3262-0.72240.02331.0572-0.2275-0.25741.32910.10081.057-100.011927.5413-145.7016
1342.55630.74210.3222.01560.04761.0962-0.07240.19780.1453-0.32620.21240.3865-0.0128-0.3833-0.140.9374-0.0546-0.19751.24570.10741.0532-92.885144.0746-145.8942
1356.69017.3196-0.971416.6929-2.06343.5056-0.12740.68260.34740.2223-0.09451.43720.7915-0.56660.22190.9819-0.1538-0.22511.53130.11911.2483-110.461135.4409-142.1652
13610.6334-2.4383-7.00183.75712.9525.2657-0.17090.0179-1.1832.288-0.79610.26421.2692-0.20150.96712.0948-0.1997-0.08031.3701-0.00621.1538-87.79887.5724-141.3248
1377.0420.55941.28356.79791.1145.6993-0.33610.2868-0.3876-0.66120.36820.24750.2126-0.2644-0.03221.1202-0.1449-0.05680.86540.03380.7355-75.413513.4439-148.171
1381.78290.72241.65252.2850.09673.374-0.0670.23250.0838-0.45440.22860.11650.3475-0.2072-0.16161.0625-0.1914-0.04610.92570.01120.7688-73.297426.1346-151.3707
1393.56270.97393.93941.02850.35316.3213-0.09020.14830.0116-0.10340.1847-0.1640.51460.3194-0.09440.9856-0.04060.01290.891-0.04320.8366-58.616536.4012-147.0006
1404.85610.29950.26755.68691.80135.2298-0.27320.48910.0904-0.68840.180.72950.1173-0.33720.09321.0903-0.1422-0.12851.05410.0830.8271-76.918236.4432-156.9065
Refinement TLS group
IDRefine-IDRefine TLS-IDAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1A4 - 20
2X-RAY DIFFRACTION2A21 - 113
3X-RAY DIFFRACTION3A114 - 142
4X-RAY DIFFRACTION4A143 - 187
5X-RAY DIFFRACTION5A188 - 193
6X-RAY DIFFRACTION6B4 - 16
7X-RAY DIFFRACTION7B17 - 24
8X-RAY DIFFRACTION8B25 - 61
9X-RAY DIFFRACTION9B62 - 181
10X-RAY DIFFRACTION10B182 - 193
11X-RAY DIFFRACTION11C4 - 25
12X-RAY DIFFRACTION12C26 - 42
13X-RAY DIFFRACTION13C43 - 116
14X-RAY DIFFRACTION14C117 - 155
15X-RAY DIFFRACTION15C156 - 193
16X-RAY DIFFRACTION16D4 - 29
17X-RAY DIFFRACTION17D30 - 118
18X-RAY DIFFRACTION18D119 - 164
19X-RAY DIFFRACTION19D165 - 187
20X-RAY DIFFRACTION20D188 - 193
21X-RAY DIFFRACTION21E4 - 29
22X-RAY DIFFRACTION22E30 - 73
23X-RAY DIFFRACTION23E74 - 147
24X-RAY DIFFRACTION24E148 - 164
25X-RAY DIFFRACTION25E165 - 193
26X-RAY DIFFRACTION26F4 - 16
27X-RAY DIFFRACTION27F17 - 23
28X-RAY DIFFRACTION28F24 - 63
29X-RAY DIFFRACTION29F64 - 153
30X-RAY DIFFRACTION30F154 - 193
31X-RAY DIFFRACTION31G4 - 56
32X-RAY DIFFRACTION32G57 - 129
33X-RAY DIFFRACTION33G130 - 166
34X-RAY DIFFRACTION34G167 - 187
35X-RAY DIFFRACTION35G188 - 193
36X-RAY DIFFRACTION36H4 - 29
37X-RAY DIFFRACTION37H30 - 94
38X-RAY DIFFRACTION38H95 - 147
39X-RAY DIFFRACTION39H148 - 165
40X-RAY DIFFRACTION40H166 - 193
41X-RAY DIFFRACTION41I4 - 16
42X-RAY DIFFRACTION42I17 - 42
43X-RAY DIFFRACTION43I43 - 118
44X-RAY DIFFRACTION44I119 - 153
45X-RAY DIFFRACTION45I154 - 193
46X-RAY DIFFRACTION46J4 - 30
47X-RAY DIFFRACTION47J31 - 118
48X-RAY DIFFRACTION48J119 - 157
49X-RAY DIFFRACTION49J158 - 187
50X-RAY DIFFRACTION50J188 - 193
51X-RAY DIFFRACTION51K4 - 49
52X-RAY DIFFRACTION52K50 - 118
53X-RAY DIFFRACTION53K119 - 150
54X-RAY DIFFRACTION54K151 - 165
55X-RAY DIFFRACTION55K166 - 193
56X-RAY DIFFRACTION56L4 - 9
57X-RAY DIFFRACTION57L16 - 28
58X-RAY DIFFRACTION58L29 - 70
59X-RAY DIFFRACTION59L71 - 146
60X-RAY DIFFRACTION60L147 - 193
61X-RAY DIFFRACTION61M4 - 26
62X-RAY DIFFRACTION62M27 - 63
63X-RAY DIFFRACTION63M64 - 128
64X-RAY DIFFRACTION64M129 - 171
65X-RAY DIFFRACTION65M172 - 193
66X-RAY DIFFRACTION66N4 - 29
67X-RAY DIFFRACTION67N30 - 129
68X-RAY DIFFRACTION68N130 - 165
69X-RAY DIFFRACTION69N166 - 187
70X-RAY DIFFRACTION70N188 - 193
71X-RAY DIFFRACTION71O4 - 23
72X-RAY DIFFRACTION72O24 - 68
73X-RAY DIFFRACTION73O69 - 161
74X-RAY DIFFRACTION74O162 - 187
75X-RAY DIFFRACTION75O188 - 193
76X-RAY DIFFRACTION76P4 - 24
77X-RAY DIFFRACTION77P25 - 90
78X-RAY DIFFRACTION78P91 - 130
79X-RAY DIFFRACTION79P131 - 180
80X-RAY DIFFRACTION80P181 - 193
81X-RAY DIFFRACTION81Q4 - 30
82X-RAY DIFFRACTION82Q31 - 62
83X-RAY DIFFRACTION83Q63 - 118
84X-RAY DIFFRACTION84Q119 - 181
85X-RAY DIFFRACTION85Q182 - 193
86X-RAY DIFFRACTION86R4 - 18
87X-RAY DIFFRACTION87R19 - 64
88X-RAY DIFFRACTION88R65 - 130
89X-RAY DIFFRACTION89R131 - 187
90X-RAY DIFFRACTION90R188 - 193
91X-RAY DIFFRACTION91S4 - 19
92X-RAY DIFFRACTION92S20 - 45
93X-RAY DIFFRACTION93S46 - 97
94X-RAY DIFFRACTION94S98 - 148
95X-RAY DIFFRACTION95S149 - 193
96X-RAY DIFFRACTION96T4 - 30
97X-RAY DIFFRACTION97T31 - 82
98X-RAY DIFFRACTION98T83 - 113
99X-RAY DIFFRACTION99T114 - 159
100X-RAY DIFFRACTION100T160 - 193
101X-RAY DIFFRACTION101U4 - 29
102X-RAY DIFFRACTION102U30 - 117
103X-RAY DIFFRACTION103U118 - 137
104X-RAY DIFFRACTION104U138 - 171
105X-RAY DIFFRACTION105U172 - 193
106X-RAY DIFFRACTION106V4 - 25
107X-RAY DIFFRACTION107V26 - 79
108X-RAY DIFFRACTION108V80 - 128
109X-RAY DIFFRACTION109V129 - 164
110X-RAY DIFFRACTION110V165 - 193
111X-RAY DIFFRACTION111W4 - 20
112X-RAY DIFFRACTION112W21 - 63
113X-RAY DIFFRACTION113W64 - 130
114X-RAY DIFFRACTION114W131 - 187
115X-RAY DIFFRACTION115W188 - 193
116X-RAY DIFFRACTION116X4 - 18
117X-RAY DIFFRACTION117X19 - 57
118X-RAY DIFFRACTION118X58 - 118
119X-RAY DIFFRACTION119X119 - 148
120X-RAY DIFFRACTION120X149 - 193
121X-RAY DIFFRACTION121Y4 - 20
122X-RAY DIFFRACTION122Y21 - 61
123X-RAY DIFFRACTION123Y62 - 118
124X-RAY DIFFRACTION124Y119 - 156
125X-RAY DIFFRACTION125Y157 - 193
126X-RAY DIFFRACTION126Z4 - 9
127X-RAY DIFFRACTION127Z16 - 29
128X-RAY DIFFRACTION128Z30 - 80
129X-RAY DIFFRACTION129Z81 - 187
130X-RAY DIFFRACTION130Z188 - 193
131X-RAY DIFFRACTION131a4 - 21
132X-RAY DIFFRACTION132a22 - 61
133X-RAY DIFFRACTION133a62 - 117
134X-RAY DIFFRACTION134a118 - 169
135X-RAY DIFFRACTION135a170 - 193
136X-RAY DIFFRACTION136b4 - 22
137X-RAY DIFFRACTION137b23 - 61
138X-RAY DIFFRACTION138b62 - 127
139X-RAY DIFFRACTION139b128 - 164
140X-RAY DIFFRACTION140b165 - 193

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more