[English] 日本語
![](img/lk-miru.gif)
- PDB-3sdp: THE 2.1 ANGSTROMS RESOLUTION STRUCTURE OF IRON SUPEROXIDE DISMUTA... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 3sdp | ||||||
---|---|---|---|---|---|---|---|
Title | THE 2.1 ANGSTROMS RESOLUTION STRUCTURE OF IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS | ||||||
![]() | IRON SUPEROXIDE DISMUTASE | ||||||
![]() | OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) | ||||||
Function / homology | ![]() superoxide dismutase / superoxide dismutase activity / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Stoddard, B.L. / Ringe, D. / Petsko, G.A. | ||||||
![]() | ![]() Title: The 2.1-A resolution structure of iron superoxide dismutase from Pseudomonas ovalis. Authors: Stoddard, B.L. / Howell, P.L. / Ringe, D. / Petsko, G.A. #1: ![]() Title: The Structure of Iron Superoxide Dismutase from Pseudomonas Ovalis Bound to the Inhibitor Azide: Coordination Changes and Dynamics During Catalysis Authors: Stoddard, B.L. / Ringe, D. / Petsko, G.A. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 85 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 60.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 381.2 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 451.1 KB | Display | |
Data in XML | ![]() | 18.6 KB | Display | |
Data in CIF | ![]() | 26.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 21550.943 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() #2: Chemical | #3: Water | ChemComp-HOH / | Sequence details | RESIDUE 85 OF EACH CHAIN IS IDENTIFIED AS ALA IN THIS ENTRY. NOTE THAT THIS RESIDUE IS IDENTIFIED ...RESIDUE 85 OF EACH CHAIN IS IDENTIFIED | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.75 Å3/Da / Density % sol: 55.34 % |
---|---|
Crystal grow | *PLUS Temperature: 4 ℃ / pH: 4.8 / Method: batch method |
Components of the solutions | *PLUS Conc.: 55 %sat / Common name: ammonium sulfate |
-Data collection
Reflection | *PLUS Highest resolution: 2.1 Å / Num. obs: 21140 / % possible obs: 72 % / Rmerge(I) obs: 0.086 |
---|
-
Processing
Software |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Rfactor obs: 0.232 / Highest resolution: 2.1 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.1 Å
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Software | *PLUS Name: PROLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
|